Oncorhynchus tshawytscha (Chinook salmon): 112232491
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Entry
112232491 CDS
T05605
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112232491 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112232491 (lig4)
Enzymes [BR:
otw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112232491 (lig4)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112232491 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
HTH_Tnp_Tc3_2_like
DUF4607
Motif
Other DBs
NCBI-GeneID:
112232491
NCBI-ProteinID:
XP_024255293
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All DBs
Position
LG07:complement(15236023..15240815)
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AA seq
914 aa
AA seq
DB search
MEGTSKSESAAPQSSVAAQVPFLHLCTTLEKIQKTKFRPDKSKFLRDFIDSWRKFHAALH
KDNPTTPDSFYPAMRLIVPSFERERVAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLRVFHLDAAELYNVTTDLNKVCRQLHDPFVS
LSEVSIGLFFAFKPMLAAVANMRQVEKQMGNSTFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNVFKPHIVKCILDGEMMAYNPTTDTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNDHKFGNETLKVRHDNLQTVFTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGTERPEVYIDPCNSVIIQVKAAEIVSSEMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHLRINDNDEPEKKKRKSPAAAKPKKAVGVIDHFKSQDLSGI
TKETDMFEDVEFCVMNGNEAHPKAELEKAVARCGGIVVQNPGPDTYCVIAAVENMRVKNL
ISSDQHDVVWAAWLLVCLDRKQVVPWQPRHMIHISPSTKEHFAKEYDCYGDSYFVDTDEQ
QLREVFGRIGRVDTLTAQCIAKLEERFSWDDLPTSMFRPFRVYMDRYADIGDPKSIVPAT
CLDTRALEFRFHGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIVRESWVTES
IKAGFLRNDNDYLV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacctcaaaaagcgaatctgctgctccccagagctctgtcgctgctcaagtt
ccatttcttcacctgtgcaccacgcttgaaaaaatacagaagaccaaattccgaccagac
aaatcaaagtttctccgtgacttcatagactcctggaggaagttccatgcagccctccac
aaagacaaccctaccaccccagactctttctacccggccatgcgtctcatagtcccctcg
ttcgaaagggagcgtgtggcctatggcattaaagagagtatgttagccaagctctacata
gacgtcttgggtctccccaagaatggaccggaagccaacaaactgttgaattaccgcacc
cccaccacatctcagggggaggcgggagacttcgctctcatgacctactttgtgttgaag
aaacgctgcacaagccagggaaacctcaccatcagagaagtcaacgactttctggactcg
gtggccatcaacaatgctggtaagcagaaggacctggtgaagaagagcctactgcacctt
atcacccagagcacggcactggagcagaagtggcttatccgcatgatcctgaaggacatg
aagctgggggtcagcaaagagaccgtgctccgggtgttccacttagatgcggccgagctc
tacaacgtcaccacagacctaaacaaggtgtgccggcagctccacgacccctttgtgtcc
ctcagcgaagtgtccattggcctgttctttgccttcaaacctatgctagccgccgtggcc
aacatgcgccaggtggagaagcagatgggcaacagcaccttcttcatagagaccaagctg
gatggagagcgcatccagctgcacaaggatggcgacgtctacaagtacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcgccgctagagggctccctgacgcctttc
atccacaatgtcttcaagccccacatagtcaaatgcatcctggatggggagatgatggcg
tacaaccccactaccgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggatgactccgagctccagacgtgcttttgcgttttcgatgtacttcttgtgaacgac
cacaagtttggcaacgagacgttgaaggtgcgccacgacaaccttcagactgtcttcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggctaaaactatgcaagaggtg
gtaaacgccctcaacgaagccattgacaacagggaagagggcatcatggtgaaagatccc
tcatccgtctacaagcccgataagcgaggtgagggctggctcaagataaagccggagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggcgaggtggcatgatgtctcatttcctcgtcgcggtggccgaagctccgaagcctgga
gagaaaccctccgttttccacacgctctgtcgcatcggttccggctacaccatgaaggag
ctgtatgacttggggttgaagctggccaagcactggaaagtctaccggaagaacgaccct
ccggcctctattctgtgtgggacggagagaccggaagtctacattgacccgtgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgagatgtacaaaaccaactgc
acgctacgcttccccaggatcgagaagatccgggaggacaaagagtggcaccagtgcatg
accctagctgagctcgatcagtttcgcaacaaggcgtccgggaagttgttctcgcgccac
ctccgcatcaatgacaatgacgagcctgaaaagaagaagcgcaagtcgccggcagcggcc
aagcccaagaaagctgtcggcgtcatcgaccacttcaagtcccaggacctatctggcatt
accaaggagacggacatgttcgaggacgtggagttctgcgttatgaatggcaatgaggcg
caccccaaggcggagctggagaaagcagtggcccgatgtggcggtattgtagtccagaac
ccgggaccggacacctactgtgtgatcgccgctgtggagaacatgcgtgtgaagaacctg
atctcttcagaccagcacgacgtagtgtgggctgcctggctgctggtgtgcctagacagg
aagcaggtggtgccatggcaaccgcgtcacatgatacacatttcaccctccaccaaggag
cactttgccaaggaatatgactgctacggagacagctactttgtggacacggacgagcag
cagctgagggaagtcttcggtcggattggtagagtggacactttgacggcacagtgcatc
gctaagttggaggaacgcttcagctgggacgacctccccactagcatgttcagacctttc
agggtctacatggacagatacgcagacataggagaccctaaaagcattgtaccggcaact
tgtctggacacgcgggctctggaattccgcttccacggagggacagtagtgcagaagctt
gaggaaggggtctctcatgtcatcgtggtggaggaaacaagagtgttggctttaagaacc
ctcagacgactctttaccaaaaagttcaagattgttagagagtcatgggtaacagaatct
atcaaagcagggtttttgcggaatgacaatgactacctagtgtaa
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