Oncorhynchus tshawytscha (Chinook salmon): 112232964
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Entry
112232964 CDS
T05605
Name
(RefSeq) otoferlin-like isoform X1
KO
K19949
otoferlin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112232964
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112232964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
FerB
Ferlin_C
dsrm_Ferlin
FerI
DUF3013
Motif
Other DBs
NCBI-GeneID:
112232964
NCBI-ProteinID:
XP_042177806
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All DBs
Position
LG05:complement(37624438..37766824)
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AA seq
2096 aa
AA seq
DB search
MALLVHLKTIRDLRGKGDRIAKVTFRGLSLYTHVLENCEDEARFDETFRWPIASRVDENE
MLEVQVFNYSKVFTNRVIGTFKMVLQKVAEEGQLEVTDTLIDDNNTAIRASVTIYIKYTT
VDGTVGVWSDGEFLDIPGDPEGTFQFETDSLLSGHSQGSGVSQGRSIHGIPTFRKAGKGV
FSAMKLGKTKSSKDDHKKDEPAILDMEDLNRKAMRLGGVGALDPDCISLASVTAVTTNVS
NKRSKPDIKMEPSSGRPVDYQISITVVEARQLVGLNMDPVVCVEIGDDKKYTSMKESTNC
PYYNEYFVFDFHVPPDVMFDKILKLSVIHSKNLLRSGTLVGTFKLDVGTVYSQPEHQFYH
KWATLSDPDDITAGCKGYIKCDIAVVGKGDNIKTPHKANETDEDDIEGNLLLPEGVPLER
QWARFYVKIYRAEGLPKMNTSIMANVKKAFIGENRDLVDPYVQVLFAGQRGKTSVQKSSY
EPIWNEQVVFTEMFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKIANDGDKGFLPTMGP
AWVNMYGSTRQYTLMDEHQDLNEGLGEGVSFRARLLISVAVEILDTTSTEIVSSTEVQVE
PVSNISESVTGKIEEFFLFGSFLEATMIDRKIGDKPISFEVTIGNYGNQIDGVSKPSAAK
KKKKEGGGGGGGESDEEESELIQQNSSEDEADDNGDLVSVSSSPPMKPVITDRNYFHLPY
FEKKPCIYIKSWWQDQRRRLYNSNIMDKIADKLEEGLNDVQEIIKTETAYPERRLRGVLE
ELSTGCNRFVTLANKDQNQAGRTKLDKERLKSCMREMESMGQQAKLIRSQVKRNTVRDKL
KMVQNFLHRLRFLADEPQHSIPDVFIWMMSSNKRIAYARIPSKDILYSIVDEETGKDCGK
VKAVFLRLPGKKGFGPAGWTVQAKMEMYLWLGLNKQRKDFLSGLPNGFEENKAPRTGSCL
QSLPPISLVYNMKQVFQLRAHMYQARSLFAADSSGLSDPFARVFFSTHSQVTEVLSETLC
PTWDQLLVFDDVELFGEAGELRDDPPIIVVEVYDQDTVGKAEFIGRTFAKPITKMCDEHY
GPPRFPPQLEYYQIYRGNSTAGDLLAAFELLQIPYDHEEIRRALIAVHDFAVPQIKIGQG
GRAELPAINGPTDSDRGPILPVPMGIRPVLSRYRIEVLFWGLRDLKRVNLAQVDRPRVDI
ECAGRGVQSALIVNFKKNPNFSTLVKWFEVDLPENELLHPPLNIRVVDCRAFGRYTLVGS
HAVTSLRRFIYSPPDKTQNNWASAARLMNGYMVLTNGGSQSRPSSLYSRTLPRTLSHPTG
DVIVNMDANPSVRKMDTVVKLDASSDAVIKVDVNEEEKEEKKKKKKKKKGEVEEDDETDE
RMLDWWSKYFASIETLMEILRAQEAALAEAEEREEQEIAAEGADIKPDDLPVKGSKGKEK
SRDKSRNKDKKKSHHAGEGTEKRPSKPKVNELLVYNKELEAEYDNFEDWLHTFNLYRGKA
GDDDEAALDDDRIVGRFKGSMCMYKLPLSEEITREAGFDPNMGMFQSIPHNDPINVLVRV
FVVRATDLHPADVNGKADPYVVIKLGKSELKDKENYISKQLNPVFGKAFDMEATFPMESM
LTVSVYDWDLVGTDDLIGETKIDLENRYYSKHRATCGIANNYSVHGYNMWRDPMKPSQIL
AKLCKEGKLDGPHYGPGGRVKVANRIFMGATEIEDETGLKKQTDEHLALTVLKHWEEIPR
VGCKLIPEHVETRPLFHPEKPGIEQGRIEMWVDMFPMDMPAPGPAIDISPRKPKKYELRV
VIWNTDEVILEDDDYFTGEKSSDIFVRGFELRVIIWNTDDVVLEDDAFMTGEKMSDIYVK
GWLKGQQEDKQDTDVHYHSLTGEGNFNWRFVFPFDYLMAEEKIVISKKESMFSWDETEYK
IPARLTLQVWDADHFSADDFLGAIELDLNRFPRGAKTAKQCSIGMVQNEAELPCISIFKQ
KRVKGWWPFVARDENDEMELTGKVEAELHLMSAEEAEKSPVGLGRNEPDPLEKPNRPNTS
LSWLLSPMHVVCILAWRQYKLHCVLLLGAVLGLLFLGLLFFSMPSALSNKIFNIAG
NT seq
6291 nt
NT seq
+upstream
nt +downstream
nt
atggctcttctagtccaccttaagacgatccgggaccttcgtggaaagggggacagaatc
gccaaagtcacatttcgaggtctgtcgctctacacgcatgtgctggaaaactgtgaggat
gaggccagatttgatgagacgttccgatggccgattgccagtagagtggatgaaaatgag
atgctggaagttcaagtgttcaactacagcaaagtcttcaccaacagagtcattggaacc
ttcaagatggttctacagaaggtggcagaggagggccagctagaggtgacagacacactc
atcgacgacaacaacaccgccatcagggccagtgttaccatatacatcaagtacacgaca
gtggatgggactgtgggggtttggagtgacggagaattcctggacatcccgggtgacccg
gagggaacgttccagtttgagacggacagtctgctctccggacacagccaggggtcagga
gtgtcacaggggcgatccatccatggaattcccacttttaggaaagcggggaagggggta
ttctcagccatgaagctcggcaagaccaagagctccaaggatgaccacaagaaagatgag
ccagccatcttggacatggaggatctgaacaggaaggccatgcgtctgggaggggtgggg
gctctggacccagactgcatctccctggcctccgtcactgccgtcaccaccaatgtctcc
aacaagagatcaaagcctgatatcaagatggagcctagttctgggaggcctgtggattac
cagattagcatcacagtcgttgaggccagacagctggttggccttaacatggaccctgtg
gtctgtgtggagattggggacgacaagaagtacacctccatgaaggagtccactaactgc
ccctactacaatgagtattttgtctttgacttccacgtcccaccagatgtcatgtttgac
aagatcctgaagctctcagtgatccactctaagaacctgctgcggagtggcaccttagtt
ggaactttcaagctggatgttggcacagtctactcccagcctgagcaccaattctaccac
aagtgggccacactgtctgaccctgatgacatcacggccggctgcaaaggttacatcaag
tgtgacatcgccgtggtggggaagggggacaacatcaagactccccacaaggccaacgag
acggatgaagacgacatagaagggaacctccttcttccggagggtgttcccttggagagg
cagtgggcacgattctacgtgaagatctaccgcgctgagggccttcccaagatgaacacc
agcatcatggccaacgttaagaaggccttcataggggagaacagagacctggtggacccc
tacgtacaagtgctcttcgccggacagagagggaagacatcggtccagaagagtagttat
gagccgatctggaatgagcaggtggtcttcactgagatgtttcctccgctctgcaaacgc
atgaaggtccagataagagactccgacaaagtcaatgacgtcgccataggaacacacttc
attgacctgcgaaagatcgccaatgatggtgacaaagggttcctgcccaccatgggccca
gcctgggtcaacatgtatggctccacccgccagtacactctgatggatgagcaccaggac
ttgaatgaggggctgggggaaggcgtgtccttcagggcccgcctcctcatctccgttgcc
gtggagatcctggacaccacctccactgagattgtaagctccaccgaggtgcaggtggag
cctgtctctaacatctcagagagtgttacagggaaaatagaggaattcttcctgtttggt
tccttcctggaggccaccatgatcgacaggaagatcggcgataagccaatcagcttcgag
gtcacaataggcaactacggcaaccagatagatggagtgagcaagccctcggcagctaag
aagaagaagaaagagggaggaggaggaggaggaggagagagtgatgaggaggagtcagag
ctgatccagcagaactccagtgaggacgaggcagatgataatggggacctggtgtctgtg
tcctcctccccacccatgaaacctgtcataacagacaggaactacttccacctgccctac
tttgagaagaagccgtgtatctacatcaagagctggtggcaggaccagaggagaagactt
tacaactccaacatcatggacaagatcgctgacaaactggaggagggtctgaatgatgtg
caggagatcatcaagacagagacagcctatccagagcgcagactcagaggggtgctggag
gaactcagcactggctgcaatcgtttcgtcactttggccaacaaggaccagaaccaggca
ggcagaaccaaactggacaaagagagactcaagtcctgcatgagagagatggagagcatg
ggccagcaggccaagctgattcgctcccaggtgaagaggaacacagtgagagacaaactg
aagatggttcagaacttcctgcacaggctacgtttccttgccgacgagccccagcacagt
atcccagacgtgtttatatggatgatgagtagcaacaagcgtatcgcctacgcccgcatc
ccctccaaagacatcctctactccatcgtagacgaggagacaggcaaggactgtggcaag
gtcaaagctgtcttcctcaggctgcctggtaagaaggggtttggtccagccgggtggaca
gtgcaggctaagatggagatgtacctgtggctgggcctcaacaaacaaaggaaggacttc
ctgtctggcctgcccaacggctttgaagagaacaaggctcccaggacaggctcgtgtctg
cagtctttaccccctatcagtctggtttataacatgaagcaggtattccagctgagggct
cacatgtaccaggccaggagtctgtttgctgcagacagcagtggcctgtcagaccccttc
gccagggtcttcttctccacacacagccaggtcactgaggtcctgagtgagactctgtgc
cctacgtgggatcagctgctggtgtttgatgatgttgagctgttcggggaggccggcgag
ctacgagacgacccacctatcattgtggtagaggtctacgaccaggacactgtgggcaag
gcagagttcattggtcgtacgtttgctaagcccatcactaagatgtgtgacgagcactac
ggacccccgaggttcccccctcagctagagtactaccagatctaccgtggtaactctacc
gccggtgacctactggctgccttcgagctgctacagattccctatgaccatgaggagatc
aggagggctctgattgctgtccatgactttgcagttcctcagattaagattgggcaaggg
gggagggcggagcttcctgccatcaatggtccgacagactcagaccgtggacccatcctc
cctgtgccaatgggcatcagacctgtcctaagccgttatcgcatagaggttctgttctgg
ggcctgcgggatctgaagagggtgaatttggcccaggtggacagacccagggtggacata
gagtgtgcagggagaggagtccagtctgcactcatcgtgaacttcaaaaagaaccccaac
ttcagcacactggtcaagtggttcgaggtggacctgccagagaacgagctgctccaccct
cctcttaacatccgggtagtggactgcagggcgtttggccgatacaccctggtgggttcc
cacgccgtcaccagcctacgacgcttcatctacagccccccagacaagacgcaaaacaac
tgggccagcgcagctagactgatgaatggctacatggtcctgaccaacggggggtcccaa
tctcgcccctcctccctttactcccgcaccctgccccgcaccctctctcaccccacaggt
gatgtcatagtcaacatggatgccaacccctcagtcaggaaaatggacacggtggtgaag
ttagatgcttcgtctgatgcagtaattaaagttgatgtgaatgaggaggagaaagaagag
aagaagaagaagaagaagaaaaagaagggagaggtggaggaggatgatgagaccgacgag
agaatgctggactggtggtccaaatattttgcttccatagagacactgatggagatcctc
agggcccaggaggcagcgctggctgaggccgaggagagggaggagcaggagatagcagca
gagggagcagatatcaaacctgatgacctccctgtaaaaggctccaaggggaaggagaag
agccgagacaagagcaggaacaaggacaagaagaagagtcaccatgcaggagaggggaca
gagaaacgccccagcaaacccaaagtgaacgagctactggtgtacaacaaggagttggag
gcagagtatgataactttgaggactggctccacaccttcaacttgtacagagggaaggca
ggggacgacgatgaagcagccctggatgacgacaggatcgtgggcagattcaagggctcc
atgtgcatgtacaagctgcctctgtctgaggagatcacccgggaggcgggcttcgaccct
aacatgggcatgttccagagcattccacacaatgacccaatcaatgtgctggtgcgagtc
ttcgtggtcagggccacagacctccatcctgctgatgtcaatgggaaagcggacccctac
gtcgtcatcaaactgggcaagtcagagctgaaggataaagagaactatatctccaaacag
ctcaaccctgtctttggcaaggcgtttgacatggaggctacgttccccatggagtccatg
ttgaccgtgtcagtgtacgactgggatctggtgggcactgatgacctcatcggggagacc
aagatcgacctggagaaccgctactatagcaaacacagagctacctgtggcatcgctaac
aactactctgtgcatggttacaacatgtggcgtgaccccatgaagccaagccagatcctg
gccaagctctgtaaggagggcaagctggacggaccccactacggccccgggggaagggtc
aaggtcgccaaccgtatcttcatgggtgccacagagatcgaggatgagactggtctaaag
aagcagacagatgagcacctggcgctgacggtgctgaagcactgggaggagatccctagg
gtgggctgtaaactcatcccagaacacgtcgagacaagacccctgttccaccctgagaaa
cctggcatcgaacaggggcggattgagatgtgggtagacatgttccccatggacatgcca
gcacctggacccgccattgacatatcaccacggaaaccaaagaaatatgagctcagggtg
gttatatggaatacagacgaagtaatactcgaggacgatgattacttcactggggaaaag
tccagtgacatatttgtcaggggctttgagctgcgtgttattatttggaacactgatgac
gtagttctagaggacgatgctttcatgacaggagagaagatgtctgacatctatgtcaag
gggtggctgaaagggcaacaggaggacaaacaggacacagatgtccactaccactctctg
acaggcgaggggaatttcaactggcgcttcgtgttcccctttgactacctgatggccgag
gagaagattgtcatctctaagaaggagtccatgttctcctgggatgagacagagtacaag
atccctgcacgcctcaccctgcaggtctgggacgctgaccacttctccgctgatgacttc
ctaggtgcaatagagctggacctgaacaggtttccccgcggggcgaagacagccaagcag
tgttctataggcatggtccagaatgaggctgagctgccctgcatttccatcttcaaacag
aagagagtcaagggctggtggccattcgtggcccgcgacgaaaacgacgagatggaactc
acgggtaaagtggaggcggagcttcatctgatgtcggcagaggaagcggagaaaagtcct
gttggtctgggacgcaatgagcctgaccctctggagaaaccaaatcgtcccaataccagt
ctgtcgtggttgctgagcccaatgcatgtggtgtgtatcctggcctggaggcagtacaag
ctgcactgtgttctactgctgggggctgtgctgggactactgttcctgggcctgctcttc
ttctccatgccctctgccctcagcaacaagatcttcaacatcgctggctga
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integrated database retrieval system
