Oncorhynchus tshawytscha (Chinook salmon): 112233141
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Entry
112233141 CDS
T05605
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04115
p53 signaling pathway
otw04145
Phagosome
otw04148
Efferocytosis
otw04350
TGF-beta signaling pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
112233141
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112233141
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112233141
04148 Efferocytosis
112233141
09143 Cell growth and death
04115 p53 signaling pathway
112233141
09144 Cellular community - eukaryotes
04510 Focal adhesion
112233141
09142 Cell motility
04820 Cytoskeleton in muscle cells
112233141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112233141
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112233141
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112233141
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112233141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_ADAMTS
EGF_3
TSP1_CFP_C
cEGF
EGF
Laminin_G_3
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
112233141
NCBI-ProteinID:
XP_024256317
LinkDB
All DBs
Position
LG11:complement(33966311..33975790)
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AA seq
1172 aa
AA seq
DB search
MKLIGIFLLLVLWTCEGSRVAESGDDNGVYDLFELVKVNKRHQGVTLVKGADPYSPAYKV
LNADLIPPVPEISFRDLIDSVQAERGFLLLVNFKQFKKTRGSILTVEKNDGSGPIFEIIS
NGKAQTLDVVYSTGNKQQVVSIEDADLATGHWKNITLFIQEDRAQLFVGCEEINISEIDV
PIQKVLTHEVADIARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAIMRNKGCQSSETLADV
MTLDNPVNGSSPAIRTDYTGHKSKEIQQVCGFSCEDITSMFKELKGLGVVVKQLSNELNR
VNKESTLLMNQMRIHRGVCLHNGIVHKDKDEWTVDGCTECTCQNSATVCRKISCPLMPCA
NATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGQG
RETEVCQKSPCPIDGVWGPWSLWDTCSVTCGGGFQTRQRLCNNPTPKYGGKECQGDGKTS
QLCGKEDCPIDGCLSNPCFAGAKCISFDDGSWKCGACPVGYTGDGINCKDIDECKEVRDA
CFTLNGVHRCENTEPGYNCLACPPRYSGQQPFGRGVEQATAKKQVCTPRNPCQDGSHDCN
KNANCIYLGQFSDTMFRCECKPGYAGNGHICGDDTDLDGWPNKDLLCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDACDHDDDNDGIPDDRDNCPMVYNPAQYDVDRDDVGDRCDNCV
HESNPDQVDTDNNGEGDACAIDIDGDGILNERDNCPYVYNVDQRDTDGDGVGDHCDNCPL
ENNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNILDIYDVCPENFDISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGVSIKVVNSTTGPGEHLRN
ALWHTGDTAGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKSGLIRVVMYEGKRIMADSGNI
YDNTYAGGRLGMYVFSQEMTYFSDLKYECKDS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgataggaatatttctccttttggtgctttggacttgtgagggcagccgggta
gcagagagtggagatgataacggtgtatacgacctattcgagcttgtgaaagtgaacaag
aggcaccaaggagttaccttggtaaaaggcgcagatccctacagcccagcctataaggtc
ttgaacgcagacctgatccccccggttcccgagatctccttcagggacctcattgattca
gtacaagctgaaagaggattccttctcctcgtcaacttcaagcagttcaagaaaaccagg
ggtagtattttgactgtggagaagaatgacggatcaggaccgatattcgaaattatttct
aatggcaaggcgcaaactctggatgtggtatactccaccgggaacaagcaacaggtagtg
tccatagaagatgcagatctagcgacaggacattggaagaatatcacgctgttcattcag
gaagatcgtgcccagctgttcgtaggatgtgaagagatcaatatatccgaaatagacgtg
cccatccaaaaggtcctgacgcatgaggttgctgacattgcccgtctgagaattggaaaa
ggagctgtgaaagacagatttatgggagtgcttcagaacgtgcgcttcgtttttggaacc
acgttggaggcaatcatgcgcaataagggatgccaaagctctgaaacattggctgatgtc
atgaccctggacaacccagtcaatgggtctagcccagcaataaggactgattacactggc
cacaaaagcaaagaaattcagcaggtctgtggcttttcctgtgaggatatcaccagcatg
ttcaaggagctcaagggactcggcgtggttgttaagcagctgtcaaacgagctcaacaga
gtgaataaggagagcactctgctcatgaaccagatgagaatccaccgtggggtctgtctt
cacaacggcattgtgcacaaggacaaagatgagtggaccgtggacggctgcacagagtgt
acctgccagaactctgccactgtgtgtcgcaaaatctcttgtcccctgatgccctgtgcc
aacgccaccgtgcccgatggagagtgctgcccacgttgtggaaccccgagtgactatgct
gaggatggctggtccccctggtctgaatggactcattgttctgtgtcttgtggacgggga
atccagcagcgcggtcgatcatgcgaccgcatcaacagcaattgcgagggcacctctgtg
cagacccgcgactgctaccctcaggaatgtgacaagcgcttcaagcaggatggtggttgg
agccactggtctccctggtcctcctgctctgtgacctgtggtgaaggagtcatcacccgc
attcgcctttgcaactccccaactccccagatgggaggcagagactgccaaggacaaggc
agagagaccgaggtctgccagaaatcaccatgtccaattgacggagtctggggaccctgg
tctttatgggacacctgctctgtcacctgtggaggtggattccagactcgccagcgtctt
tgtaacaaccctacccccaaatacggaggaaaggaatgtcagggcgatggcaaaacatcc
caactgtgtggaaaagaggactgccctattgatggctgtctgtccaacccctgctttgct
ggtgctaagtgtatcagctttgatgatggttcctggaagtgtggcgcatgcccagtgggc
tacaccggagacggcatcaactgcaaggacatcgatgagtgcaaggaggtccgtgacgca
tgcttcacactcaacggagtccaccgctgtgagaacactgagcctggttacaactgcctt
gcctgcccccctcgctactcaggacaacagcccttcgggagaggagtggagcaggcaaca
gccaagaaacaggtgtgcacaccccgtaacccctgccaagacggcagccatgattgcaac
aagaatgccaactgtatctacctgggtcagttcagcgacactatgttccgctgtgagtgc
aaaccaggttacgctggcaatggtcacatctgtggagatgacactgacctggatggatgg
cccaacaaagacctcctatgtgtggagaatgccacctaccactgcaagaaggacaactgt
ccaaaccttcccaactctggacaggaggatcacgacaaagatgggcttggtgacgcttgc
gatcacgatgatgacaatgatgggatccctgatgatagggacaactgcccaatggtctac
aaccccgctcagtatgatgtggacagagatgacgttggtgatcgatgtgataactgtgtg
catgagagtaaccccgaccaagtcgacacagacaacaacggagagggggatgcctgtgct
attgacattgacggtgatggcattctaaatgagagggacaactgcccatacgtctacaat
gtggaccagagagacactgacggggatggagtgggagaccactgcgacaattgccctctt
gaaaacaacccagaccagattgactctgactcagaccgtgtgggagacaagtgcgacaac
aaccaggacattgatgaggacggtcatcagaacaacttggacaactgtccctatatcccc
aatgccaaccaggctgaccacgacaaagacggcaagggtgacgcctgtgaccacgatgat
gacaacgacggtatccctgacgacaaggacaactgtaggctggcctttaaccctgaccag
ctggactctgatggtgatggtcgtggagatgtttgcaaagatgactttgaccaagacaac
attcttgatatctacgatgtgtgccctgagaactttgacatcagtgagacggacttccgc
aggttccagatggtaccactagaccccaagggaacctcccagatcgaccccaactgggtg
gtccgtcaccagggcaaagaactggtgcagaccgtcaactgtgaccctggcatcgctgtt
gggttcgatgagttcaacgcagtggacttcagtggaacgttctttatcaacacagacagg
gacgatgactatgctggatttgtgtttgggtaccagtccagctccaggttctacgtggta
atgtggaagcagatcacacagacctattggtcccacacgccgaccagagctcagggctac
tccggagtgtccatcaaagtggtcaactccaccacaggacctggggagcatctgaggaac
gccctctggcacaccggtgacactgctggacaggtgcgtactctgtggcacgaccccaag
aacatcggctggaaagactacactgcctacagatggcacctgatccaccggcccaagtct
ggactcatcagagttgtgatgtatgaaggcaagagaatcatggccgattccggaaatatc
tacgacaatacctatgctggtggaagactaggcatgtatgtcttctctcaggagatgaca
tacttctcagacctcaaatatgaatgcaaagattcttaa
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