Oncorhynchus tshawytscha (Chinook salmon): 112234511
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Entry
112234511 CDS
T05605
Name
(RefSeq) low-density lipoprotein receptor
KO
K12473
low-density lipoprotein receptor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03272
Virion - Hepatitis viruses
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
112234511
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112234511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112234511
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
112234511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Psg1
Motif
Other DBs
NCBI-GeneID:
112234511
NCBI-ProteinID:
XP_024258446
UniProt:
A0A8C8HYF4
LinkDB
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Position
LG09:81056420..81069511
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AA seq
879 aa
AA seq
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MGRLLCVLLVFLACCVVQTNAETICGTRQFLCGNGKCITLRWVCDDTDDCGDGTDELPGT
CLARTCGTTEFSCGGHLNQCVPSTWLCDGKADCENGADEESCAPKHCTDNKFRCSNSQCV
SASFVCDEELDCDDGSDEASCQPTTCSSTSFQCNNSVCVPRLWACDGDVDCSDGSDEWPQ
NCGTRAPGGAPKPCSLREFQCGSGECIHSSWKCDGGFDCLDRSDETNCSRLTCRPDEFQC
GDGTCIHGSRQCNRQYDCRDLSDEMGCVNVSHCKGPARFKCRSGECISMEKVCDKQRDCR
DWSDEPLRECDSNECLYNNGGCSHICNDLKIGYECQCPTGYYLTDKKRCEDIDECANPDI
CSQICVNHMGSYKCECEEGYQVDPATKACKAIGTVAYLFFTNRHEVRKMTLDKSEYTRVI
PRLKNAVALDMDMVAKEIYWSDLSQKKIYSTSMDLAADTAQHKVVIDSDIEAPEGIAFDW
VHGNIYWTDSIRSSISVSTANGSRRKTLFQNDLAKPRAIVVDPHSNFVYWTDWGTPAKIE
KGGLNGGDRAALVTDDIVWPNGITLDLLNQRLYWVDSKLHTLSSINVQGGGRRTLIIDEH
RLAHPLGITVFEERVFWTDVSNNAILSANRVTGRDIKPVAEHLVSPEDIVLYHNLKQPTG
RDWCKVANGGCEFMCLAAPQVGLHSPKYTCACPDNMLLAKDMRKCVPAAPTPAAPVKPIV
PTSNPPPAPARTSTAPPARVTTKAPIIATTITPAPPRTTKPVPRNPQPAQPDRPRIPQAQ
TTTVPQVTTQDIRHEFAAIPTAPSTPAALYIGLPIAIVCLVAFGAVLLWRNYRLKNTNTI
HFENPVYQKTTEDQVHICRSHSPDGYSYPPRQIVSLDEA
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctgctgtgcgtgctgttggtgttcctggcttgctgtgttgtccaaacaaac
gcagagacaatatgcgggaccaggcagttcctgtgtgggaacgggaagtgcattacgctg
agatgggtgtgtgatgacacagatgattgtggagatggaactgacgagctccccggaacc
tgcttggccagaacatgcggaaccacagagttcagctgtggtggacatctgaaccagtgt
gttcccagtacctggctctgtgacggcaaagcagactgtgagaatggagctgatgaggag
agctgtgcgcccaagcactgcacagataacaaattccgctgcagtaacagccagtgtgtg
tcggcctcttttgtgtgtgatgaggagttggactgtgatgacgggagcgacgaggcttcc
tgccaacccaccacctgtagctccacctccttccagtgcaacaactctgtgtgtgtgccg
cgcctgtgggcctgcgacggagacgttgactgctcggatggctccgacgagtggccccag
aactgtgggacgcgagcccctgggggtgcccccaagccctgctcccttcgggagttccaa
tgtggcagcggggagtgtatccacagtagctggaaatgtgatggaggattcgactgcctg
gatcgctctgacgagaccaactgtagccgcctcacctgccgccccgatgagttccaatgc
ggtgatggcacctgtatccacggcagtcgccaatgtaaccgccagtacgactgcagagac
ttgagtgatgaaatgggctgtgtcaatgtgagccattgcaagggtcccgccaggtttaag
tgccgtagtggggagtgcatcagtatggagaaggtgtgtgacaagcagcgtgactgcagg
gactggtcagatgagcctctcagagagtgtgattccaacgagtgcctgtacaacaatggc
ggctgctcacacatctgcaatgacctgaagatcggctatgagtgccaatgccccaccggc
tactacctgacggacaagaaacgctgtgaagatatcgatgagtgtgccaacccagacatc
tgcagccagatctgtgtcaatcatatgggcagctacaagtgtgagtgtgaggagggctac
caggtcgacccagccactaaagcctgcaaggccatcggcactgtagcctatctgttcttc
accaatcgccatgaggtgaggaagatgacactggacaagagtgagtacacgcgtgtcatc
ccccgcctgaagaatgcagtggctctggacatggacatggttgccaaggagatttactgg
tctgacctctcccagaagaagatctacagcacctcaatggacttggctgcagacacagcg
caacacaaagttgtgattgacagcgacatcgaagctccggagggcatcgcctttgactgg
gtccacggcaacatctactggaccgacagtatccgcagcagcatctccgtgtcaaccgcc
aacgggagccgtcgcaagactctcttccagaatgacctggccaaaccccgcgctattgtg
gtcgacccccacagcaacttcgtgtactggactgactggggaactccagccaagattgag
aagggaggtctgaacggaggagaccgtgctgctctggtcacagacgacattgtgtggccc
aatggaatcacccttgacctgctgaaccagcggctgtactgggtggactccaagctgcac
accctctccagtatcaacgtccagggtggcggccgaaggacactcattatagatgaacac
aggctagcccatcccctaggcatcactgtgtttgaggaaagagtgttttggacagatgtc
agcaacaatgccattctgagtgccaaccgtgtgacaggcagggacatcaagcctgtggca
gagcacctggtatccccagaggacattgtgttgtaccacaacctcaaacagccaactggc
agggactggtgcaaggtggccaacggaggctgtgagttcatgtgtctggcagccccccag
gtgggcctacattcccccaagtacacctgtgcatgccctgacaacatgctgctggccaaa
gacatgaggaaatgtgtaccagctgcaccaacacctgcagctccagtcaagcccattgtt
cccacctccaaccccccaccggcacccgcccgcacctccactgcacctccagcccgcgtc
accactaaggcccccatcatcgctaccacaattacgcctgcgcctccccgcactaccaag
cctgtgccacgcaacccccagcctgcccagccagatagacccaggatcccccaggcccag
actaccacagtgcctcaagtcaccactcaggacatccgccatgaatttgctgctataccc
acagccccttcaacccctgcagctttatacattgggctgcctatagccattgtgtgtctg
gtggcctttggtgccgtgctgctgtggaggaactacaggctgaagaacaccaacaccatt
cactttgaaaacccagtctaccagaagaccactgaagaccaggtgcacatatgcaggagc
cacagtccagacggctactcctacccaccgagacagattgtgagtcttgatgaggcttga
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