Oncorhynchus tshawytscha (Chinook salmon): 112235559
Help
Entry
112235559 CDS
T05605
Name
(RefSeq) transient receptor potential cation channel subfamily M member 4-like
KO
K04979
transient receptor potential cation channel subfamily M member 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112235559
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112235559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
LSDAT_prok
Ion_trans
Motif
Other DBs
NCBI-GeneID:
112235559
NCBI-ProteinID:
XP_042161149
LinkDB
All DBs
Position
LG24:5346691..5448103
Genome browser
AA seq
1250 aa
AA seq
DB search
MSDTEGEGGGEMSKTEKDQSWIPKIIKKRVCTTFVEDSFSNGRLCQCGGTRDTHESVALG
DYFSTAIVSHWDSSQHSSEYPTDAFGELEFAGASKRHSKFLRLSWDTPPSIVYTMMTAHW
GLPPPNLVVSVVSGEGRAKVKTWVREVLRQGLVKASQSTGAWILTGGLREGVGRCVGEAV
RDHATAASSVSLNKVVALGIAPWGLVHNRQQLVNPQGSFPARYYFQNTSRDSCCLDNNYQ
AFLLVDDGSVGRRGGEAGFRARLEDYISHQRTGIWGSGSIDIPVLCMLISGETTMLERLD
LSLRNSMPWLVLAGSGGVADLVSDVLESLSSAPPVLSSTEGEGEAGPSVDLKDRVAERVR
KHFPTETEIDKLVERVLSIYLNRDLITVYHGEQEGPDDFDTVLLKALVGASKQRVSSEAS
PYTEELKLAVTWNRVDIAKSELFNGDIHWRYQDLEDSMTDALVNDKPQFVRLFTENGLNI
LDYLTYGRLESLYRSVADSSLAYVLLQRRLGERQGLTGSQAMLPDGSPTKGSGGPPGGRR
PANTFSLFEVSRVLEDLMGDVCQPFYHSPLELENISSQRKALRRVSKLLRGDCVYQDRRC
LFPWASLFVWAVLQNRNDMAVFFWEMAGESVLSALSGCKILRELSKLESETETKLAMKEL
AQRFENLAHDVFSKCYQSSESRSFTLLIRKSPVWGGTTCLKMGMAADARLFFSHDGVQSL
LSQIWWGDMKRSTEVWKLLLTFFCPVLMYTQLISFRELEEPGKPDEVAQGRDNDSLYGET
IFSFSDIKHIEHHTQGPNSPRYHLKGTPDTPPKRPFVVSRWRQFWFAPVTSFLGNVLMYF
LFLLLFAYVLLVDFKPPPPRGPAFAECVLYFWVFTIVCEEIRETFLVGSMMWRQRMRKYI
QDVWNKCDLTAIILFIIGLTCRMFQWSYEFGRAVLCVDYMVFTLHLIHIFAIHKQLGPKI
IIVGKMMKDIFFFLFFLGVWLMAYGVANQALLYSYDPRPAWIFRRVFYRPYLHIFGQVPV
EEIDVRKEWDTECTDNVTLIEGGAEPCRSHYANWLVIVLLVIYLLVTNILLINLLIAMFS
YTFSKVQGQSDTYWKFQRYNLIVEYHSRPSLAPPFIILSHVHLFIKRYIRKVPSVKILHF
VLELTGKAANRLMTWEAIQKENFLTAQSKIQRGSDSERLKRMSVKVDSVLKQMAETRDHD
RRLRALESELEYCSSALSWIVEALSQSNMVKPTRPPPTLREPFPTPSSSI
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatacggaaggagaaggcggcggcgaaatgtcaaagaccgagaaagatcagagc
tggatacccaaaattatcaagaaacgagtatgcacaactttcgtagaggattctttcagt
aatggcaggctgtgtcagtgtgggggtacgcgggacacccatgagtcagtggctctgggg
gactatttcagcacagccatcgtcagccactgggacagctcccagcattcctcagagtac
cccaccgacgccttcggagagctggagttcgccggtgccagcaagagacacagcaaattc
ctgcgtctctcgtgggacacccctccttccatcgtctacaccatgatgacggcccactgg
gggctacctccgcccaacctggtggtgtcagtggtgagcggggaggggagagcaaaggtc
aagacgtgggtacgggaggtcctgaggcagggattggtcaaagcctcccagagcacagga
gcgtggatactgactggaggcctgcgtgagggtgtagggaggtgtgtaggggaagcggta
agggaccatgccaccgctgcctcatctgtctccctgaacaaggtggtggctctgggcatc
gctccctggggcctggtccacaaccgccagcagctggtcaatccgcagggtagcttccct
gctaggtactacttccagaacacgtcccgtgactcatgttgcctggacaacaactaccag
gcctttcttctggtggatgatgggagtgtaggccgcagagggggcgaggcaggcttcagg
gccaggctggaggactatatttcccatcagcgcacaggcatctggggcagtggaagcatt
gacatccccgtcctgtgcatgctgatatcaggagagacaaccatgctggagcggttggat
ctctctctgaggaactccatgccctggctggtgctggcggggtcgggtggtgtggccgac
ctcgtcagtgacgtcctggagagcctatcgtctgcgccccctgtcctgtcctccaccgag
ggggagggggaggcgggacctagtgtggaccttaaagacagagtggccgagagggttagg
aagcactttccgaccgaaacagagatagacaaactggtagaacgggttctgagcatctac
ctgaacagggatctgatcactgtctaccacggagagcaggagggaccagatgactttgac
acggtcttgctcaaagccttggttggagcgagtaagcagcgtgtgtcgagtgaagccagc
ccctacactgaggagctgaagctggcggttacctggaacagagtggacatcgccaagagt
gagctcttcaatggagacatccactggaggtaccaggacttggaggactccatgacggac
gcgttggtcaacgacaagccacaattcgtgcgcctcttcaccgagaacggactcaacatc
ctggactacctgacctatgggcggctggagagcctctaccgctcggtggccgacagctct
ctagcctacgtcctgctgcagcgccgcctaggagagcgccagggtttgacaggctcgcag
gccatgctgccggatggctctcccaccaaagggtctggtgggccgccaggggggcggcgg
cctgcgaatacgttcagtttatttgaggtgtcgagagtcctggaggacttgatgggggat
gtgtgtcagccattttaccactcaccactggaactggagaacatctcctcccagagaaag
gctctcaggcgtgtgagtaagctgttgcggggtgactgtgtgtaccaggacaggcgctgt
ctctttccctgggctagtctcttcgtctgggctgtgctgcagaaccgcaacgacatggcc
gtcttcttctgggagatggcaggcgagtcggtcctcagtgctctgagcggctgtaagatc
ctacgggagctgtccaagctggagagcgagacggagaccaagctggccatgaaggagcta
gcgcagaggttcgagaacctggcccacgatgtattcagtaagtgttaccagagcagtgag
agtcgctccttcaccctgctgatcaggaagtctcccgtatggggagggaccacctgtcta
aagatgggcatggccgccgacgcccgcctcttcttcagccacgatggagtacagtctctc
ctgtctcagatctggtggggggatatgaagaggagcacggaggtgtggaaactcctcctc
accttcttctgtcccgttctgatgtacacccagctcatctccttcagggaattggaggag
ccggggaagcctgatgaggttgcacagggtagagacaatgacagcctttatggagaaaca
attttctccttctctgacatcaagcacattgaacatcatacacagggtcctaatagcccc
agatatcatctaaaaggcacgcccgacaccccacctaaacggccgtttgtggtatcccga
tggcggcagttttggttcgcacccgtcacttcctttttaggcaacgttctgatgtacttc
ctgttccttctgctgtttgcctacgtgctattggtggactttaagccgccacccccgcga
ggccccgctttcgccgagtgtgtgttgtacttctgggtgttcaccatcgtctgtgaggag
atccgagagacgttcttagtgggcagcatgatgtggcgtcagaggatgaggaagtacatc
caggacgtttggaacaagtgtgacctcaccgccatcatactcttcatcataggcctcacc
tgcagaatgttccagtggtcctatgagtttggccgagcagtcctgtgtgtggactacatg
gtcttcacacttcatctcatccacatcttcgccattcacaaacaactggggccaaagatc
atcatcgtcggcaagatgatgaaggatatcttcttcttcctcttcttcctgggtgtgtgg
cttatggcatatggggtggccaatcaagcactgctgtactcctatgaccctcgccccgcc
tggatcttccggcgcgtgttctacaggccgtacctgcacatatttggacaggtcccagtg
gaagaaatagatgtgaggaaggagtgggacacggagtgcactgacaatgtgacgctgatc
gagggaggcgcggagccctgcaggagccattatgctaactggctagtgattgtcttactg
gtcatctacctactggtcaccaacatcctgctcatcaacctactcatcgccatgttcagt
tacacattctccaaggtgcagggccaaagcgacacctactggaagttccagcgctacaac
ctgattgtggagtaccactcccggccctcccttgctccccccttcattatcctctcccac
gttcacctatttatcaagagatacatccgcaaggtaccctcggtcaagatcctccatttt
gtattggagctgacggggaaagcagctaacaggttaatgacatgggaggccattcagaag
gaaaacttcctgacagcccagagcaagatccagagagggagcgactcagagaggctcaaa
cggatgtcagtcaaggtggacagtgtgctgaaacagatggctgagacaagggatcatgat
cgcagactgagggctctggaatcggagttggagtattgctccagtgcactcagctggata
gtggaagcactctcacagagcaacatggtcaaacccactcgaccaccgccaacacttaga
gagccattccctaccccctcctcttccatctga
DBGET
integrated database retrieval system
