Oncorhynchus tshawytscha (Chinook salmon): 112235560
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Entry
112235560 CDS
T05605
Symbol
irf3
Name
(RefSeq) interferon regulatory factor 3 isoform X1
KO
K05411
interferon regulatory factor 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04620
Toll-like receptor signaling pathway
otw04621
NOD-like receptor signaling pathway
otw04622
RIG-I-like receptor signaling pathway
otw04623
Cytosolic DNA-sensing pathway
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
112235560 (irf3)
04621 NOD-like receptor signaling pathway
112235560 (irf3)
04622 RIG-I-like receptor signaling pathway
112235560 (irf3)
04623 Cytosolic DNA-sensing pathway
112235560 (irf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112235560 (irf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112235560 (irf3)
04131 Membrane trafficking [BR:
otw04131
]
112235560 (irf3)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
112235560 (irf3)
Membrane trafficking [BR:
otw04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
112235560 (irf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
112235560
NCBI-ProteinID:
XP_024259779
LinkDB
All DBs
Position
LG24:5298864..5310339
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AA seq
464 aa
AA seq
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MSQSKPLLIPWLREQINSGRYPGVTWTNQERTEFCIPWKHALRQDSCSDDVLIFKAWAEV
SNGRVQGDHSIWKRNFRSALRAKGFKMLLDNKNDAANPNKLFQWPDEAPTGGSQHPEHDL
YQDPSPLQESHGLPCFNDLYLAAEETVYTAEGISTTINQDILQKCLQGLNIEQTEAIQGY
EVPVEELQYPMEGTIGGHVLLGQQQYPVVMEDAVGGAVLPSQPVYPMDGAVGGSHEQQVV
EQLTNELSRTMVGENFKTHFRVSVYYRGVKMPEQLVENEAGFRLVYRPELTQPLLDPDSG
LNLVSLPSPPPVQDETQAKLTQDILALLGEGLEVGASGSIIYGLRKGEIKAFWSLDKFDN
SRRPQGVSKCPEPLYQAKDFYGGLLKFINNEGKCPPFSLFFCLGEKWPDPDNRPWEKKLV
MVEVVLTALELLKSMAVEGGASSLQSVELQLSLQESLQEMMDLC
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaatccaaaccgctcctcatcccttggctgcgcgaacagataaatagtggccgg
tatcccggggttacctggaccaatcaggagcgaacagagttctgcatcccttggaaacat
gctttgaggcaggattcctgcagcgatgatgtacttattttcaaggcgtgggctgaggtt
agcaatggtagggttcaaggcgaccactccatttggaagagaaacttccgttctgccctc
cgagccaaggggttcaaaatgctccttgacaacaaaaatgatgcagccaaccccaacaaa
ctgttccagtggccagatgaggcacccacaggaggatctcagcacccagaacatgatctg
tatcaagatcccagtccattacaagaaagtcatggtctaccatgttttaatgacctttac
cttgcagcagaagaaactgtatacacagcggaggggatctcaaccactatcaaccaggat
atacttcagaaatgtctgcaagggttgaacattgaacaaacagaagctattcagggttat
gaagtccccgtcgaggaactgcaatatccaatggagggcacgattggagggcatgttttg
ctagggcaacagcagtatccggttgtaatggaggatgctgtgggtggagccgtgttgccc
tcgcaaccggtgtatccaatggatggagctgtcggaggttcccatgaacagcaggtggtg
gagcagttaacaaatgaattgtccagaaccatggtgggcgaaaattttaaaactcacttc
agggtttctgtgtactaccggggagtgaagatgcctgagcagctggttgagaacgaggca
gggttcagattagtctacagacctgaacttacacaaccgcttctggacccagattctggc
ctgaatctggtctctctgcccagtccaccgcctgtccaggacgaaactcaggccaaactg
acccaagatatcctggctctcctgggagagggcctggaggtgggtgcctccgggtccatc
atctacggactccgtaagggtgaaattaaggccttctggagccttgacaagtttgacaat
agcaggaggccccagggagtgtccaaatgcccagaaccactatatcaggccaaggacttc
tatggagggctgttgaagttcataaacaatgaaggaaaatgtccccccttttctctattc
ttctgtctgggagaaaagtggccagacccggacaacagaccctgggagaagaaactggtc
atggtcgaggtggtgttaaccgctctggagctactgaagtctatggcggtggaaggtggt
gcctcctctctgcagtctgtggaactgcagctgtccttgcaggagtccctgcaggagatg
atggacttgtgctaa
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