Oncorhynchus tshawytscha (Chinook salmon): 112236158
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Entry
112236158 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase C-like
KO
K06478
receptor-type tyrosine-protein phosphatase C [EC:
3.1.3.48
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112236158
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112236158
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112236158
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
otw04090
]
112236158
Enzymes [BR:
otw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
112236158
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
112236158
CD molecules [BR:
otw04090
]
Proteins
112236158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
DSPc
fn3
Tc-R-P
PTP-SAK
Y_phosphatase3
PTPlike_phytase
GH97_C
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
112236158
NCBI-ProteinID:
XP_042178423
LinkDB
All DBs
Position
LG05:81246493..81272235
Genome browser
AA seq
1429 aa
AA seq
DB search
MAGLYGLKILLLCTGLIELAICDGDTTSKGSTATIPPPGTVAITNKPTSIPITPLNSQTA
SNSTTPPPINDQDKSNISSTSPTQSTKNANDSTGPLLPNTTTITTITTTTTTTLSPSLSS
LTPTSNIITRASSQATLSNVTGDSSTSTSYPASTLNQTQTSDPASTLNQTQTSDPASTLN
QTPTFPTNTSTSQTQALPTNNSTSQTQALPTNNLTSPSLPTSTPPIHNQTSPASTLTSTT
AIPTGSQTKPTPPKCTYTVHTYTPVIYGFRIDLKASTSDTYNISYQDESGQHMTVEHQTV
NNTIVVSLKPCRNYTLTKIQPECELQGNSTLRTEKMDDLEFSTNKKLGYLCYVTKWDISD
AEWNSPEWNNITWNKDKCFKLLDEHFCTNFTTNVAVPGDCSVNISKTIPITAEYSTVKHS
PNLEFKNVLPVKIVWKNKPKNCSPKDLDIHYTCEGNNGFINLDDLEPFQKYNCSGKITHN
SKVINTKSIDVEIKCKVDITQTSTNTNTSISLKWTNDSINCPNNTQLFHSCVSCRIETKV
KDCDTTDELHYDFNKLQPFTKYICSIEPRYKYMSYDTLKKVSKTIQTAPGVPDEVVKTSL
TYTQNNAFTITCEELKPVQWKGKEKWYIATITGSETKEQKHXKCNFTFADLGYSTDYTVQ
IFTYNGKYKSKPIEKHITTRYNDKAVIGFLVFLIILTSLALIFVLYKIYILQRKKSNNND
EQIELIQPSDEENLLNVEPIGSEVLLDAYKRKIADEGRLFLQEFQSIPRIFSRNTVREAK
KSCNQPKNRYVDILPYDYNRVQLTSGNGETGCDYINASFIDGFKESKKYIAAQGPKEETV
GDFWRMVWEQQSSIIVMVTRCEESNRNKCAQYWPSPEREVEIFEGFVVKLNREEHCPDYI
IRHLSLTNKREKSAEREVTHIQFTSWPDHGVPGEPHLLLKLRRRVNAFKNLFSGPIVIHC
SAGVGRTGTYMGIDAMMEGLEAEGRVDIYGYVVKLRRQRCLMVQVEAQYILIHQALIEHN
QFGETEISLAELHPTLGTLKQRDPGNEPTLLEAEFQRLPRYKNWRTFNTGINEENKKKNR
SSSVIPYDYNRVLVKLEDESSHDQDDDDDDDDSSDEEDEESTKYINATQIDGYWCQRSLI
AAQGPLADTTGDFWQMVFQKKVNTIVMLSDLTEGDQEFCSAYWGEEKETFRDIEVELKAT
ETFPAYTTRSLQIRHPKRKDSRQVKQYQFLKWAGRELPEKPQDLMDMIKNIKQTCGYGNS
KAEKILPVVVHCNDGSSRSGVFCALWNIMDSAETEKLVDVFQVAKALRKERQGMIHSLEQ
YQFLYDAVEGSFPIQNGEVKQPATAPAAAADSIQVVNETKAAQPASATTATQQGAEVVKE
AVESTPLVAGKEAGAAAEGNEDEAKEPGSPTEKTPLEGSSNGPAVTLEV
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtctctatggactgaagatcctgctgctgtgtactgggctcatagagctggcc
atatgtgatggggatacaacttcgaaaggctccacagcaacaatacccccaccaggaaca
gtagccatcaccaacaaacccacaagcattcccatcacacctttaaactctcagacagca
tccaactcaaccactcctccacccataaatgaccaagacaaaagcaacatctccagtact
tcacccacacaatccaccaagaatgcaaacgactccacaggccccttacttccaaacact
accaccatcaccaccatcaccacgacgaccactaccaccctctcaccttcactcagttcg
cttacccccacctcaaacatcatcactcgggcatcaagccaagctaccctctccaacgta
actggcgactcgagcacaagcacttcttaccctgcaagcaccctcaaccaaacccagaca
tctgaccctgcaagcaccctcaaccaaacccagacatctgaccctgcaagcaccctcaac
caaacaccaacctttcctacaaacacctccacctctcaaacccaggctttgcctacaaac
aactccacctctcaaacccaggctttgcctacaaacaacttgacctctccatctttgcct
acaagcactccacccatccacaaccaaacctcacctgcaagcaccctgacttccactaca
gctatccccacaggcagccagactaaaccaacaccgccaaagtgtacatacacggtacat
acatacacgcctgtcatctatggctttcggattgacttaaaggcctcaacctccgacaca
tacaacatatcgtaccaggatgaatcaggacaacacatgactgttgagcatcaaacggtg
aacaacactattgtggtatcattgaagccttgcaggaactacactttgacaaagattcag
cctgaatgtgaactccaaggaaatagcactctgaggactgagaaaatggatgacctagag
ttttccaccaacaagaagctgggatatttgtgttatgtgacgaaatgggacatcagtgat
gctgaatggaacagtcctgaatggaacaatatcacctggaacaaagacaaatgttttaag
cttttagatgaacatttctgcacaaacttcacaaccaatgtagctgtgcctggagattgc
agtgtcaacatcagcaaaactatacccataacagcagagtattctacagtcaaacattct
cccaatctggaattcaaaaacgtactccctgttaaaatagtatggaaaaacaagccaaaa
aactgtagccctaaagatctggacattcattacacctgtgaaggaaacaacgggtttatc
aacttggatgatttggaaccctttcagaaatacaactgtagtggaaagattactcacaac
agtaaagtcatcaataccaagtccattgacgttgaaatcaagtgtaaagtggacattacc
cagacgtctacaaacacaaacacctccataagccttaaatggaccaatgacagcattaac
tgccccaacaatactcagctatttcactcctgcgtttcctgtagaattgagactaaagtt
aaagattgtgacaccacggatgaattacattatgattttaataaattgcagccgttcaca
aagtatatctgttcaattgagccaaggtacaaatacatgagctacgatacactcaaaaaa
gtgtctaagacaatccaaactgcacctggagtacctgatgaggtggtgaaaacgagtctg
acttatactcagaacaatgcttttaccattacatgtgaggaattaaagccagttcagtgg
aagggaaaagagaagtggtacattgcaacgatcactgggtctgagacaaaagaacaaaaa
catnaaaaatgcaattttacatttgcggacctcggctattcaacagactacacagttcag
atctttacatacaatgggaaatacaagagtaaaccaatagaaaaacacattactactcgc
tacaatgacaaagctgtgattgggttccttgtgttcctcatcatcctgacgtctctggct
ctcatcttcgttctctacaagatctacatcctgcagcgcaagaagtccaacaacaatgat
gaacagattgagctgattcagccaagtgatgaggagaacctgctgaacgtggagccaatc
ggatctgaggtgcttctggacgcctacaagaggaaaatcgccgatgagggacgtcttttc
cttcaggagtttcagagcatccccaggatcttcagccgcaacacggtcagagaggccaag
aagtcctgcaaccagcccaagaaccgctacgtagacatcctcccatacgactacaaccgt
gtccagctgaccagtggtaatggagagactggctgtgactacatcaacgccagcttcatc
gacggtttcaaggagtctaagaagtacatcgcagctcaaggtcccaaggaagagacagtg
ggggatttctggaggatggtttgggagcaacagtcctctatcatcgtcatggtaacacgt
tgtgaggagagtaacaggaacaagtgtgcccagtactggccgtctcctgaaagggaggtg
gagatctttgaggggtttgttgtgaagctgaacagagaagagcactgtcccgattacatc
atccgtcacctcagcttgaccaacaagagggagaagagcgcagagagggaggtgacccac
atccagttcaccagctggccagaccacggcgtgccgggagagccacacctcctgctgaag
ctgaggcgacgcgtcaacgccttcaagaacctcttcagtggacccatagtcatccactgc
agcgctggagtggggagaacaggcacctacatgggaattgatgccatgatggaggggctg
gaggctgagggcagagtggacatctacggatacgtggtcaagctacggcgccagagatgc
ctcatggttcaagtggaggctcagtacatcctgatccatcaggctctgatagaacacaac
cagtttggagagacagagatctccctggcagagctgcacccaacactgggcacactcaaa
cagagagaccccggtaacgagcctactctgctggaggcagagttccagagacttccacgg
tacaagaactggcggacattcaacacagggatcaacgaggagaacaagaagaaaaaccgc
tcctcttctgttattccatacgactacaacagggttctggtgaagctcgaggacgagagc
agccatgaccaggacgacgatgacgatgatgatgactcttctgacgaagaggacgaggag
tccaccaaatacatcaacgccacacagatagatggttactggtgtcagaggagtctgata
gcagcccagggtcctctagccgacaccacaggagacttctggcagatggtcttccagaag
aaggtcaacaccatcgtcatgctgtcagacctcacagaaggagaccaggagttctgttca
gcgtactggggagaggaaaaggaaaccttcagggacatcgaggtggagttgaaggccaca
gaaaccttcccagcgtacaccactcgcagtctccaaatccgtcaccctaagaggaaagac
agtcggcaggtgaaacagtaccagttcctgaagtgggcgggacgagaactcccagagaag
cctcaggatttgatggacatgatcaagaacatcaagcagacctgtggctatggcaacagc
aaggcagagaagatcctgcctgttgttgtccactgcaatgatggctcgtctcgctccggg
gtcttctgtgcgttgtggaacatcatggacagtgccgagacagagaaactggttgacgtg
ttccaggtggccaaggctctgcgcaaggagaggcaaggcatgatccacagcctggagcag
taccagtttctgtatgacgccgtggagggatcgtttcctattcagaacggggaagtgaag
cagccagccactgccccagctgcagcagctgactccatccaggtcgtcaacgagaccaaa
gcagcgcagcctgccagcgctaccacagccacccagcagggagcagaggtggtgaaggag
gcagtagagagcactcccctagtggcagggaaagaagcaggtgctgcagcagagggcaat
gaggatgaggctaaagagccaggtagccctacagagaaaacccctctggaggggtctagt
aatggccccgctgtcaccctggaggtgtga
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