Oncorhynchus tshawytscha (Chinook salmon): 112236493
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Entry
112236493 CDS
T05605
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112236493 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112236493 (smg6)
03032 DNA replication proteins [BR:
otw03032
]
112236493 (smg6)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
112236493 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
112236493 (smg6)
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
112236493 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
112236493
NCBI-ProteinID:
XP_042165022
LinkDB
All DBs
Position
LG30:complement(47742443..47785439)
Genome browser
AA seq
1688 aa
AA seq
DB search
MADELDRVRISAAELRAEASTLTNHHDDCHREERGEEGRGQRQQRHHGNDPSKRPDLQRY
TPGAGHGNRRHDSEDGGVVISPGDPLATTSDPEVELVMSLPQEEEEGHNMAATETVSTEP
GCIDGGMGKGGGEKCGGGFTSNRGGCSRAPAQQRTRRVDHHTTRADNNNNSSSSSAKGPS
GSANRPQNSRQRDEVRGKNQRGREPAGRSPGSPKATRKTRKPDREIYQPGGRRSTTTTQG
EEGRETDKPAPGPPDPVREESQARREPVIWREKEEEGRGGEETGRRQGRRETGKAAVSDH
GVENLTGKIQTLCVTAPPGREEEGKRGEGEEGVGRRRKASGEGRRSRAGGGGKGRVGGGN
EGCEKTEEEKKKRERGNRRNRGGGEKGENQDSRRRGGEGERGMTERDRRVSEEDGEREAN
RPADAQPAKGREKQRDRDTERDNQRGNNRPQPLPSDINREKNGEMQRNRDRSERCRTNTN
NHHHSSSSSKHNSKSNIRRPRNRTYSTSSASSGTSLDGLGQGDDRREDRARRDRLGHRER
DGGEGGGGQLPNRRRNTRDSSTDSLEERRRDGGEEYLSPLWRRGEEESRGGRGHRGGGRG
GLLKVSQSDRQSGTSHATSGPSDDPQGRLRQGTLPRGKERGILILPAHTDLSNLPTEPGP
RLLFGGIRGGKEAGLGRGGRGGGTRRLWDPNNPDQKPALRLSQHASLQQQQPMYLQTGGG
YGALHFLDTDDEAAGSPPVRQGEHFYPQQEAAAMAQAFYKYQNSDNPYPYNANPNARYPY
PYHTMPTTPYQMPSSNGIYPAQFYGEYRGQGYQTGAGAGLTPEEVEQQARGELGRQLRAA
DSQELQLSNLLSRDRLSADGLDRMAQLRADLLTLYERVILTDIEFSDSQNLDQALWKNVF
YQVIEHFRQLLKDPSGDSTLRITPMLLTLLDEGTVFFDALLQKLQTVFQFKLEDYMDGMA
IRPRPLRKTVRYALISAQRCLICQGDIARYREQASDSANYGKARSWYLKAQQIAPKNGRP
YNQLALLAVYTKRKLDAVYYYMRSLAASNPILTAKESLMSLFEEAKRKADQMERRRKQES
EGGSRGPGVRGGGRGEEGARVEIWVGPIGQAGVPSSHRGGSESSRDSEQEGELGSLSPSD
LNKRFTLSFLHAHGKLFTKVGMESFPSVASRVLQEFTVLLQHSPSPLGSTRMLQIITINM
FTIHNAQSRGGDSEVRSVLQEQTTALGLAMFSLLVQRCTELLRDTPAEPIPAEEREEGQE
GMVRVSAFPLDLRELLPSVKVWSDWMLGHPNQWNPPPCRIDCSLDVWRSLADLCNALARV
DHGEAPLYKADGDGGEGDEELRLLLLEEDRLLAGFVPLLAAPQEPCYVDCTGDTAIAADC
KRVTVLKYFLEALCGQEEPLLAFKGGKYVSMATSPQPGRPGDARSRQDSQTERESDDVIV
EAESSVSDGDDGSEDDIRELRARRSALTNKLAEQQKRRDKIQAVLQTCGQLELEIRPLFL
VPDTNGFIDHLTGLKTLLQSGTYIVVVPLIVITELDGLAKGQESCDGSGSGRGGSGCRGN
TGGGGPTHARSVQEKAKVAVAFLERGFEAREPCLRALTSRGSQLESIAFRSEDTSGQQGN
NDDVILSCCLHYCKDEAKSLMPAQTNGPVRLRREVVLLTDDRNLRVKALTRNVPVRDIPA
FLTWAKVG
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaactagaccgagttcggatttcagctgcggagctgcgagctgaagcgtcg
actttgaccaaccatcacgacgattgtcacagagaggagcgaggagaggagggacgtggc
caacgacagcagcgtcaccacggcaacgacccgtcaaaacgccctgacctgcagcgctac
acgcccggggctggccacggcaaccgtcgccatgacagcgaggacggcggcgtagtcatc
tcccctggagacccgttagccacgacctctgaccctgaggtggaactggtgatgtcactg
ccacaggaggaggaagaaggacacaacatggctgccactgagacagtttcaactgaacct
ggatgtatagatggagggatggggaaaggaggaggagagaaatgtggaggaggttttact
tcaaaccggggtggatgctctcgagcgcctgcacaacagaggactcgaagagttgaccac
cacaccaccagagcagacaacaacaacaacagtagtagcagtagtgcaaagggaccgtca
ggctcagctaaccgaccacagaactccagacagagggatgaggtgagagggaagaaccag
aggggtagagagccagcagggcgttcccctggctctcccaaggccaccaggaagacccgt
aaacctgaccgagagatctaccagcctgggggtcggaggagcaccaccaccacccagggg
gaagagggaagagagacagataaacctgctcctggtccccctgatcctgtcagagaggaa
agccaagccaggagggaaccagtcatatggagagagaaagaggaagaaggcagagggggt
gaagagacaggcagaaggcaggggaggagagaaacagggaaagcagccgtctcagaccat
ggagtagagaacctgactggaaagatacagacactctgtgtgactgccccacctgggaga
gaagaggaggggaagagaggagagggcgaggaaggagtaggcaggaggaggaaggcaagc
ggtgagggcaggaggagcagagctggaggtggaggcaagggacgagtaggaggaggaaat
gaaggatgcgagaagactgaggaggagaagaagaagagagagaggggaaaccgcaggaac
agaggaggtggggagaaaggggagaatcaggactccaggagaagaggaggagagggtgag
cgagggatgaccgagagagacaggagagtgtcggaagaagatggagagagggaagcgaac
cgtcctgcagatgcacagccagcaaagggaagagaaaaacagagggatagagatactgag
agagacaaccagagagggaacaacagaccccaacctctaccctcagatataaacagagag
aagaatggagagatgcagagaaacagagataggagtgagagatgcaggactaacactaac
aaccaccaccactcgtcatcttcctctaaacacaactccaagtcaaacatcagaagaccc
aggaatcgcacctacagcaccagttctgccagcagtggcaccagcctggacggactggga
caaggggatgatcgtagggaggacagggcccgacgagaccgactggggcacagggagaga
gatggaggagagggaggaggaggtcagctaccgaacaggaggagaaacactagagactcc
tcaacagactcactggaggagaggaggagagatgggggagaggagtacttgagccccctg
tggaggagaggggaggaggagagcagagggggaagaggacacagaggaggagggagagga
gggctcctgaaagtgtctcagagcgacagacagtcaggtacctcccatgccacctcaggc
cccagcgatgacccccaggggcgcctcaggcagggcactctgcctcgtggtaaggagagg
ggcattctcatcctccccgcccacactgacctctccaatttgccgacggagcccgggcca
aggctcctttttggtgggattcgaggaggaaaagaggcgggactagggagaggaggaagg
ggcggaggaacaaggcggctctgggatcccaacaaccccgaccagaaacccgctctccgg
ctctcccagcatgcctctctccagcagcagcagcccatgtaccttcagacgggcggcggt
tacggagcgctgcacttcctggatacggacgacgaggctgcagggagtcccccggtccgc
cagggggagcacttctacccccagcaggaggccgcagccatggcccaggccttctacaag
taccagaactctgacaacccttacccttacaatgccaaccctaatgcacgttacccgtac
ccctaccacactatgcctaccaccccctaccagatgccctcttccaatggcatttaccca
gcccagttttacggggagtataggggccaggggtaccagactggggctggagcaggtctg
acaccagaggaggtggagcagcaggccaggggagagctggggagacagctgagggctgca
gacagccaggagttacaactcagcaacctcctatctagagacagactcagtgctgacgga
ctggaccgcatggctcaactcagagctgacctgttgaccctgtatgagcgggtgatccta
acagacatagagttcagtgacagtcagaacctggaccaggctctatggaagaacgtgttc
taccaggttatagagcacttcagacagctcctcaaagaccccagcggagactcaaccctg
cgcatcacccccatgctcctcactctgctggacgaggggacggtgttctttgatgcactg
ctgcagaagcttcagacggtgtttcaatttaaactggaggattacatggacggcatggcc
atcagaccacgtccactacgcaagacggtgaggtatgctctgatcagtgcccagcggtgt
ttgatctgtcagggggacatcgcccgttaccgagagcaagccagcgactcggctaactac
ggcaaggcccgcagctggtacctgaaggcccagcagattgctcctaagaacggacgacct
tacaaccagctggccctgctggctgtttacacgaagaggaagttggatgcagtgtattac
tacatgcgtagccttgctgcctccaaccccatcctcactgccaaggagagtctcatgagt
ctgtttgaagaggccaaacgcaaggcggaccagatggagcggaggaggaagcaggagtcg
gagggggggtccaggggcccgggggtccgaggaggaggacggggggaggagggggccagg
gtggagatctgggtcggccctattggacaggcaggggttccatcatcacaccgcgggggc
agcgagtccagcagagactctgaacaggaaggagaactgggcagcctcagccctagtgat
ctcaataagaggtttacactcagcttcctccacgctcacggaaaactcttcactaaagtg
ggcatggagtcgttcccttcggtggccagtcgggttctccaggagttcacagtgctgctc
caacacagcccctcccccctgggcagcacacgcatgttgcagatcatcaccattaacatg
ttcacgatacacaacgctcagagcagaggaggagacagtgaggtgagatctgtgttacag
gaacagactacagctctgggtctggccatgttctctctgctggtccaacgctgcacagag
ctgctgagagacacacccgcagagcccatcccagcggaggagagagaagaggggcaggag
gggatggtgagagtttctgcctttccattggacctgagggagctgctgcctagcgtcaag
gtctggtctgattggatgcttggacaccccaaccaatggaatcctccaccttgccgtata
gactgtagtcttgatgtgtggcgtagcctggcagacctgtgtaatgcgttggcgcgtgtc
gaccacggcgaggcgcctctgtacaaggcagacggggacggaggcgagggggatgaggag
ctccgcctgctgctattggaggaggacaggctactggccggcttcgtcccgctgctcgct
gccccacaggaaccctgctacgtagactgcactggggatacagcgatagctgcagactgt
aaaagggtaacagtattgaagtatttcctggaggctctgtgtggacaggaagaacctctc
ctggcttttaaaggagggaagtacgtctccatggcaacctctccccaacccggtcgcccc
ggcgacgcacgcagcagacaggactcgcagacagagagagagagtgatgacgtcatcgtg
gaggcggagtcgtctgtgtcggacggtgatgatggcagtgaggatgacatccgagagctc
cgggccagacgcagcgccctcaccaacaaactggctgagcagcagaaacgcagggacaag
atccaggcggtgttacagacgtgtggtcagttggagttagagatccgtcctcttttcctg
gtccccgacaccaacggtttcatcgaccacctcaccggcctcaagacgctgcttcagtct
gggacctacattgtggtggtgcccctcatagtgataacagagttggatggtctggcaaag
gggcaggagagctgcgatggctctggcagtgggcgtggtggcagtggttgtcgtggaaac
accggtggtggtggaccgacccacgcccggtcggtccaggagaaggctaaggttgccgtg
gcgtttctagagcgagggttcgaggccagggagccctgtctcagagcgctgaccagcaga
ggaagtcaactagagtctatcgccttccgcagcgaagacacctccggacaacagggaaac
aatgatgatgtcatcttgtcctgctgtctccactactgcaaagatgaggctaaaagcttg
atgcctgcacagacaaacggtccagtgcgtttgcgtcgggaggtggttctcctgacagat
gaccgtaacctgcgggtcaaagccctgaccaggaatgtgccggtcagggacattcctgcc
ttcctcacctgggccaaagtgggctga
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integrated database retrieval system
