Oncorhynchus tshawytscha (Chinook salmon): 112236521
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Entry
112236521 CDS
T05605
Name
(RefSeq) lysosomal-trafficking regulator
KO
K22937
lysosomal-trafficking regulator
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112236521
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Others
Others
112236521
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beach
WD40_CDC20-Fz
PH_BEACH
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
NBCH_WD40
EIF3I
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
WDR55
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_SCAP
CNH
Motif
Other DBs
NCBI-GeneID:
112236521
NCBI-ProteinID:
XP_042161633
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Position
LG24:complement(32801412..32841305)
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AA seq
762 aa
AA seq
DB search
MYFVEDNAADAHDNQSAHGETEAASFSWTYEEIKEVHKRWWQLRDNAVEIFLTNGRTLLL
AFHTTKFRDDVYHNILTSDLPNLLEYGNITALTHLWGSGQISNFEYLTHLNKHSGRSFND
LMQYPVFPFILRDYISETLDLGDSSIYRNLNKPIAVQSKEKEDRYVDNYKYLEEEYRKGA
HDDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSMNTTW
RLSSFESMTDVKELIPEFFYLPEFLVNREGFDFGVRQNSERVNHVNLPPWARNDPRLFIL
IHRQALESDQVSQTLCQWIDLVFGLKQKGKAAVHAINVFHPATYFGMDVSSVEDPVQRRA
LETMIKTYGQTPRQLFSASHISRAGPRLIMEGELPAAMGLLVQLAFRETREQVKDIVYPS
PLSWIKGLKWGEYVGSPSSPDPAVCFSQPHGERFGSLLALPTRAICGLSRNFCLMMIYSK
EQGVRSMHSTDIQWSAILSWGYADNMLRLKSKQSEPPINFIQCSPLHQVTTCAWVSDGCQ
LFTGSRCGVITAYINRFNTTTPTEMEVESRVHLYGHSSEVTSLHVCKPYSILISVSRDGT
CILWDLNRLCYVQSLTGHKSPVTAVSASETTGDIATVCDSVGGGSDLRLWTVNGDLIGHV
HCREIICSVAFSNQPEGVSVNVITGGLENGVVRLWSTWDLKPVREITFPKSNKPIISLTY
SCDGHHLYTANSEGTVMAWCRRDQQRMKLPMFYSFLSSYAAS
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtactttgtggaggataacgcagctgacgcccatgacaaccagagtgcccacggggag
acggaggcagcgtcattctcctggacctatgaggagattaaggaggtccataagaggtgg
tggcagctcagagacaacgctgtagagatcttcctcaccaacggacggactctcctgctg
gccttccacaccaccaagttccgtgatgacgtgtaccacaacatcctgacctccgacctc
cccaacctcctggagtatggtaacatcacggcattaacacacctgtggggctcggggcag
atcagtaactttgagtacttgacgcacctcaacaaacactctgggcggagcttcaacgac
ctgatgcagtaccctgtcttccccttcatactgagggactacatctcagagacactggac
ctgggggacagctccatctacaggaacctgaacaagcccatagcagtccagtctaaagag
aaggaggatcgctatgtggacaattataagtatctagaggaggagtatcgtaagggagcg
catgatgacgaccccatgcctcctgtccagccgtaccattacggatctcactactccaac
tctggcactgtactacacttcctggttcgcatgcctccattcaccaagatgttcctggcc
taccaggaccagagctttgatatccctgaccggacgttccactctatgaatacaacatgg
cgtctctcctcgttcgagagcatgactgacgtcaaggagctaataccagagttcttttac
ctcccggagttcctggtcaacagagagggttttgactttggtgtgcgtcaaaacagtgag
cgtgtgaaccacgtcaacctgccaccctgggcgcggaacgaccctcgcctcttcatcctg
atccaccgccaggccctggagtcagaccaggtctctcagaccctctgtcagtggatcgac
ctggtgtttgggctgaaacagaaaggaaaggcagctgtacatgccatcaacgtattccac
cctgctacatatttcggtatggacgtgtcgtcagtggaggacccagtgcagcggcgtgct
ttggagaccatgatcaagacgtacggacagacgcccagacagctgttctctgcatcccac
atcagcagagctggacccagactcattatggagggagagcttcccgctgccatgggcctc
ctggtgcagctggccttcagagagaccagggaacaggtcaaagatatagtttacccgagt
cccctgtcctggatcaagggcctgaagtggggtgagtatgtgggctcccccagctctcca
gaccctgcagtgtgtttcagccagccccatggagagaggtttgggtctctactggctctc
cctaccagagccatctgtggactgtcacgcaacttctgtctcatgatgatctacagcaag
gaacaaggtgtgaggagcatgcacagtacagatatccagtggtctgccatcttgagttgg
ggctatgctgacaacatgctgaggctgaagagcaaacagagtgaaccgcccatcaacttc
atacagtgctctccacttcaccaggtaacaacgtgtgcctgggtgtctgatggttgtcag
ctgttcaccggcagtaggtgtggagtcatcacggcctatattaaccgcttcaatactaca
actcctacagagatggaggtagagtctcgggtccacctgtatggccacagctctgaggtg
accagcctccatgtgtgtaaaccatacagcatccttatctctgtgtccagggatggaaca
tgcatcctctgggacctcaacaggttgtgttatgtccagagcctgacaggtcacaagagc
ccggtgaccgcagtgtcagccagtgagaccacaggggacatcgctacggtctgtgactca
gtgggcgggggcagtgacctacggttgtggactgtgaacggcgatctgattggccacgtc
cactgtcgtgagatcatctgctctgtggcgttctccaatcaaccggagggcgtgtctgtc
aacgtcattacagggggactggagaacggagtggtcaggctgtggagcacgtgggacttg
aagccagtgagagagatcaccttccccaagtcgaacaagcctatcatcagcctgacctat
tcatgtgacggtcaccacctctacacagctaacagcgaggggacggtcatggcctggtgt
aggagagaccagcagaggatgaaactgcccatgttctacagtttcctctctagctacgct
gccagctga
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