Oncorhynchus tshawytscha (Chinook salmon): 112236610
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Entry
112236610 CDS
T05605
Symbol
trpc6b
Name
(RefSeq) short transient receptor potential channel 6 isoform X1
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112236610 (trpc6b)
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112236610 (trpc6b)
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
DUF16
Motif
Other DBs
NCBI-GeneID:
112236610
NCBI-ProteinID:
XP_042150944
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Position
LG13:complement(92949343..92994305)
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AA seq
849 aa
AA seq
DB search
MFRWINEDRHTMLRQTLAKTRRLGMRGPAYMFSARSASLSLTEERFLDAAEYGNIPGVRK
MLEELPDLNVNCVDYMGQNALQLAVANEHLEVTELLLNKDNLARIGDALLLAISKGYIRI
VEAILSHRAFTDTQRLINSPGRAETQDDFFSYDEDGTRFSHDITPIILASHCHEYEVVHI
LLRKDARIERPHDYLCKCGTCSYHQKHDSFSHSRSRINAYKGLASPAYMSLSSKDPVMAA
LELSNELAVLANIEKEFKKDYKELSVQCEDFVVGLLDLCRNTEEVEAILNGDIDASENNE
PHERPSFIRLKLAIKYELKKFIAHPNCQQQLMSIWYENLSGLRQQTNVVKFLVVLGVAVG
LPVLALLYWVAPACKLGKIIRGPFLKFVAHAASFTIFLGLLVMNAADRFQGTKLLPNMTV
QDHPSQLFRMTTTPFTWMEILIISWVIGMVWAECKEIWSQGAREYLSETWNLLDFGMLSL
FVTSFITRFMAFWHAYSAQSYVNKHYTDLSNITLVPEIEYYRLARNNWVPSDPQIISEGL
YSIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMFGMFNLYSY
YLGAKQNDAFTTIEESFKTLFWAIFGLSEVKSVKINNGHKFIENIGYILYGVYNVTMVIV
LLNMLIAMINNSFQEIEDDADVEWKFARAKLWFSYFEEGGTLPVPFNLVPSPKSIIALVL
GLRDLMLKALNRHKSCHNEDTELNKVNLIIMRALHTLLISIQAYTTIMFSSISQKIMKRL
IKRYVMKAQINKDSEEVNEGELKEIKHDISSLRYELLEQKNHNMEELAELIRRLGEKIPA
EQQRHQGQI
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgttcagatggatcaatgaggaccgtcacaccatgctacgacagaccctggccaagaca
cggagactgggcatgcgggggccggcctacatgttcagcgcccgctcagccagcctatcc
ctgaccgaggagcgcttcctggacgcggcggagtacggcaacatccccggggtccgcaag
atgctggaggaacttcctgatctcaacgtcaactgtgtggactacatgggccagaatgca
ttacagctggcggtggccaacgagcatctagaggttacggagctgttactgaataaggat
aatctggccaggataggggatgctctactgttggcaatcagtaaaggatacattaggata
gtggaggccatattgagtcacagggccttcacagacacacagaggctcatcaacagtcct
ggccgagcagagacacaagacgacttcttctcctatgacgaggatggtacacggttttct
catgacatcacccccatcatcctggcctctcactgccatgagtatgaggtagtacacatc
ctcctgaggaaggacgcccgtatcgagcgaccacacgactacctctgtaagtgtggcacc
tgcagctaccaccagaagcatgactcattcagccactctcggtcccgtatcaacgcctat
aaagggctggccagcccggcctacatgtctctctctagcaaagaccctgtgatggctgcc
ctggagctgagcaatgagctggctgtcctggctaacatcgagaaggagtttaagaaagat
tacaaggaactgtccgtccaatgtgaagactttgtggtcggactgctggacctgtgccgt
aacacggaggaggtggaggccatcttgaatggggacattgatgccagtgaaaacaatgag
ccacatgaaagaccaagttttataagactaaagctcgcaataaaatatgaactgaagaag
ttcatagcccatccaaactgtcagcagcagctcatgtctatctggtatgagaacctgtct
ggactgagacagcagaccaacgttgtcaagtttctggtagttctgggtgtagctgttgga
ctgcctgtcctggctctgctctactgggtggcaccggcttgcaagctggggaagataata
cgtggtcccttcctgaagttcgtggcccatgcagcttccttcaccatcttcctgggcctg
ctggtgatgaatgcagcggatcgcttccagggtaccaaactgctccctaacatgaccgta
caggaccacccctctcagctgttcaggatgacgaccacccccttcacctggatggagata
ctcatcatatcctgggtcataggaatggtctgggctgagtgtaaggagatttggtcccag
ggagctcgggaatatctttcggagacatggaatcttctagactttggaatgctgagcctt
ttcgtaacatccttcatcactagatttatggcgttctggcatgcgtattctgcacagagc
tacgtcaacaagcactataccgacctgtccaacattaccctggtcccggagatagagtac
tacagactggcccgtaataactgggttccctcagacccccagatcatctcagagggtctg
tattccatcgctgtggtactgagcttctctcgcatcgcctacatcctcccagccaatgag
agtttcgggcccctgcagatatctctgggacgcacggtgaaagatatcttcaagttcatg
gtgatcttcatcatggtttttgtggccttcatgtttggaatgttcaatctctactcatac
tacctgggagccaagcagaacgacgccttcaccacgattgaggaaagtttcaagacatta
ttctgggccatatttggcctgtccgaagtcaagtcagtgaagatcaacaatggccataag
tttatcgagaatatcggctatatcctttatggggtttataacgtcaccatggtgatcgtc
ctgctcaacatgctcattgccatgatcaataactccttccaggaaatagaggatgacgct
gatgtagagtggaaatttgcccgggctaagctatggttctcctactttgaggaaggtggg
acattacctgtcccctttaacctggttcctagtcccaagtcaatcatcgccctggtcctg
gggctaagagacctcatgctgaaggctctcaacagacacaagagctgtcacaatgaggat
acagagctcaataaggtgaacctcataatcatgcgcgcattgcatactttactcatttct
atacaagcttatacaactatcatgttttcctctatttcacagaagataatgaaacgcctc
atcaagagatatgtgatgaaagcacagatcaataaagacagtgaggaagtgaatgaagga
gagctgaaggagattaaacatgacatctctagtttacgctacgaactcctggagcagaag
aaccacaatatggaggagttagctgagctgatccggagactgggagagaagatacctgcc
gagcagcagaggcatcagggtcagatatag
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