Oncorhynchus tshawytscha (Chinook salmon): 112239235
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Entry
112239235 CDS
T05605
Symbol
nod2
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 2 isoform X1
KO
K10165
nucleotide-binding oligomerization domain-containing protein 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
112239235 (nod2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
otw04054
]
112239235 (nod2)
Pattern recognition receptors [BR:
otw04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
112239235 (nod2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
CARD
NLRC4_HD2
LRR_6
NOD2_WH
AAA_16
AAA_29
AAA_22
T2SSE
AAA_30
Viral_helicase1
AAA_25
AAA_18
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112239235
NCBI-ProteinID:
XP_024263493
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All DBs
Position
LG04:72552089..72561541
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AA seq
1030 aa
AA seq
DB search
MSINYNPHNNSHFLLLQDYFPAVANWLKLRSYICMSARQLVLRQRAELLRALCCGGSSEG
LESVLDLLLSWGMLFWEDYQNVLVPCRGLCANTRVLLDLVYTKGDETCRLLLAAFKQVLP
EAQRAGLSFGNCCTADLENIRDDTKELHGTAIQTLQTDRPDLVRRLRDHIEGALEVLLHT
GSFTPSDCDEVQLPVYTPSQQTRRLLDQVRSKGESAAKVLLQYFQQTEDHPSPSNQEAPP
KECLSYQKKLRSTVSAQSHFLRTYGGTSSLSLEDIYTEGQLELAQGGSEAQPQTGALGLE
DVVGLVGTLNQEADTVLVSGDAGSGKSTLLQRLHLLWARGVALHDFFLLFSFSCRRLSSE
QRELSLRELLFLHCCWPDGDQDRIFQFILDHPHLILFTFDGLDELMQSFSDSEQRHCCPT
QCAPVPTLLFNLLQGSLMKGVRKVVTSRPEAVGPTLKRYLRKEVLLKGFSPGGIDCFVRK
YHRDPTVATRVLECLRSNTALLGLCHIPVFCWIVSKCYKELLGCGEGEGSPKTITDVYLM
ILQHFFQRRASQRNTMGIGWVQEHQDTALHLGQLAMEGLGASCYIFTGTELQKCGVTEED
ICMGFLIRSKDLSSSTNCKHYEFLHITMQCFFAALYIVLNNNSDRSTIPKLFQPQNRQQQ
PGFHRACLGHCLTQQEGALKEANKAAETPNLQITATFVSGLLAQRHRSLLLLSCPGPTLD
RKSKQVVTCLSKGMQKHFKSIPRPVEGEKKSMHAMPGFVWLIKCIHEMQDSRIARDAMAK
LEVEHLKLTYCNIGPGECTALAYVLQHLRNPVGLQLDYNYVGDVGVEQLLPCLHVCHSVY
LRHNNISDEGIRKLIEKGIQCERFQKIALFNNKLTDACTECFAHLLKMKQNFLSLRLGNN
NITAAGAGQLAEGLRFNRSLQFLGLWGNKIGDKGAEAIANALKDSQTLVWLSLVDNGVGN
AGACALAPLIKNSTLEELWLTKNCITRTGVECLILALESNTSVKAVWLKGNELSPEEVEE
MTQREPRFTF
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtccattaattataatccacataataattcacatttcctgttgctgcaagattatttt
cctgctgtagcaaactggctcaaattaagatcctacatctgtatgagtgcccggcagctg
gtcctgaggcagagagcagagctgctgcgtgccctgtgctgtggtggctcttctgagggt
ctggagagtgtattggacctactcctgtcctggggcatgctgttctgggaggactaccag
aatgtactggtaccatgccgtggtctgtgtgccaacacaagggtgctactagatctggtg
tacaccaagggagatgagacctgtcgactgctcctggctgctttcaaacaggtcctccct
gaggcccaaagagctggcctctcttttggaaactgttgtactgccgatctagaaaatata
agagatgatacaaaagaactacatggtacagctatccagaccctccagacagacaggcct
gatctggtgaggaggctaagggaccatattgaaggagctctggaggtcctgctgcatacg
ggcagctttacaccatctgattgcgatgaagtgcagctacctgtgtacaccccctcacaa
cagacaaggcgtctactggaccaggtcagatcaaagggggagtctgcagcaaaggtccta
ctgcaatactttcagcaaacagaggaccatccctcaccatctaaccaagaggctcctccc
aaagagtgcttgtcctatcagaagaagctgcgcagcactgtgtcggcccagtcacatttc
ctcagaacgtatggaggaaccagcagtctgtctctagaagacatctacacagagggtcag
ctggagcttgcccagggtggcagtgaggcccagccccagactggtgctctggggctggag
gacgtggtgggcctggtgggcaccctgaaccaggaggctgacactgtgctagtctctggg
gatgcaggcagtgggaagagcacccttctccagaggctgcacctcctctgggccaggggg
gtggctctacatgatttcttcctcctcttctccttcagctgccgcaggctgagctcggaa
cagagggagctgtctctcagagagctgctgtttctgcactgctgctggccggacggggac
caggaccgaatctttcagttcatcctggaccatccgcacctcatcctcttcaccttcgac
ggcctggacgagctcatgcagagcttctcagactcagagcagaggcactgctgccccacc
cagtgtgccccagtccccaccctgctcttcaacttgctgcagggatccctcatgaagggg
gtgaggaaggtggtgaccagccggccagaggcagtgggtcccaccctgaagcggtacctt
cgcaaggaagtcctcttgaaaggcttctcgcccggcggaatcgactgcttcgtgaggaag
tatcatcgcgacccgacggtggccaccagggtcctggagtgtctacgaagcaacacagct
ctactgggcctgtgtcacatcccggttttctgctggattgtgtccaagtgttataaggag
ctgctgggctgtggagagggagagggcagtcccaagaccatcacagatgtttacctcatg
atcctgcagcatttcttccagcgccgggcctctcagaggaacacgatggggataggatgg
gtgcaggagcaccaggatactgccctgcatctggggcagctagccatggagggcctgggg
gcctcttgttacatcttcacaggcacagagctacagaagtgtggggtgaccgaggaagat
atctgcatggggttcctcatccgtagtaaagacctctcctcctccactaactgcaaacac
tacgagttcctgcacattaccatgcagtgcttctttgctgctctctacattgtcctgaac
aataactcggaccgctccaccatccctaagctctttcagccgcagaacaggcagcaacag
cctggctttcacagggcgtgtctggggcactgcttgacccaacaagaaggggccttgaag
gaggccaataaggcagcagagacacccaacctccagataacagccacttttgtgtctggg
ctcttggctcagcgccaccgtagcctgctgcttctctcctgccctgggcccactctggac
aggaagtccaagcaggtggtgacgtgcctgtccaaaggcatgcagaagcactttaaatcc
atccctcggcccgtggagggggagaagaagagcatgcacgccatgccgggcttcgtgtgg
ctcatcaagtgcatccatgagatgcaggacagcaggatcgccagagacgctatggctaag
ctagaggtggaacacctgaagctgacctattgtaacataggccctggggagtgtactgca
ctggcctacgtgctccagcaccttaggaaccctgtggggcttcagctagactacaactat
gtaggagatgttggtgtggagcagctgctgccttgcctgcatgtctgccactctgtatac
ctgagacacaataacatatcagatgagggaattcgtaaattgattgaaaaaggcatccag
tgtgagcgctttcagaagattgcgctcttcaacaacaagctaactgatgcctgcacagag
tgcttcgctcacctcctgaagatgaaacagaattttctctctctaaggctgggaaacaat
aacatcacagcagcaggggcagggcaactggcggagggactgaggttcaatcggtcacta
cagttcttggggctttggggaaataaaataggtgataaaggtgcagaggccattgccaat
gctctcaaagacagccaaaccttggtgtggctcagcctggtagacaatggtgttggcaat
gcaggagcatgtgctcttgccccactcatcaagaacagtacgctagaggagctgtggtta
accaaaaactgcatcacaagaacaggtgtggagtgtctaatactggctcttgaaagcaac
actagtgtgaaggcagtgtggttgaaaggtaatgagctcagcccagaagaggtggaggag
atgacacagcgggaacccaggtttacattctga
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integrated database retrieval system
