Oncorhynchus tshawytscha (Chinook salmon): 112239684
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Entry
112239684 CDS
T05605
Symbol
ddx58
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04622
RIG-I-like receptor signaling pathway
otw04623
Cytosolic DNA-sensing pathway
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
112239684 (ddx58)
04623 Cytosolic DNA-sensing pathway
112239684 (ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112239684 (ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
otw04054
]
112239684 (ddx58)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112239684 (ddx58)
Pattern recognition receptors [BR:
otw04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
112239684 (ddx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
PhoH
IstB_IS21
SNF2-rel_dom
AAA_19
ATP-synt_ab
AAA_25
Motif
Other DBs
NCBI-GeneID:
112239684
NCBI-ProteinID:
XP_042183918
LinkDB
All DBs
Position
LG10:2023676..2077839
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AA seq
973 aa
AA seq
DB search
MYELEKSNLQRCSKYVIHILRPSYVKGFMTTYLQPEVAERILSEESKSVTAAAQVFLDQV
CLLDELGWYQALLDALEAEDYKGLCEALKGWDFQTLESTKEHRVLLDRIEPRFTKLIKPR
DLLLHLGDCLRKRECEEILAIENLKGQIAAAERLTDCLKRSDKQNWFKLLKSALFSCELT
EALQLLEPDTESSMSKMEVGDEEEGETVMTVSFQYTEQSDDDDGMLMSSNPLTPSETPPT
SATGATSGVGEVQKGGEKRLREEEERGGGEKSRGGEKKMREYQRELAEPVFQGKNTVICA
PTGCGKTVVALAICEQHLKVKGKGAKVVFMATKVDVFNQQYKLFQEHFQEKDPDIRIDGL
CGNQGDQLSMKVVMENNDIIVLTPQILVNAMARGEVPSLSCFSLLILDECHNTTGKHPYN
IIMTSYLDAKLSTEQNGQHLPQIVGLTASVGIGSFKNQSEAENNICQLCASLDSRIISTI
HTNTDELQSYVHTPDKEFFLVQKRHIDPFIRIIHDIMAKIEGLAKTVYNIESLSSIENRD
YGSQKYEQWIVDVQKKCRVLQLKDQEEESRVCRALYNYTEHLRKYNDALIINEDARTKDA
LEYLSSFIQQVKNAGHDKTERQLTAYFDGQQGVLRGLSSGGXKENPKLDMLQYILEEQYR
QNDETKSVLFVRTRALADALKSWMEESDSLKFLKPGVLIGRGRKSSQLTGSGMTLNSKKG
VLDSFKSFDNQSKILIATSVADEGIDIPQCNLVLMYEYVGNVVKMVQVRGRGRAQGSKCI
LVSDKKDRIDKEKHNMEKEKIVERAIRNLQDTPTEMLRKMEVFQRGDKVCRDMVKMVPER
PRTEGSYQLLCSKCKKHSCYTDDIRVLQDSHHIVLDPTLFSRARTEPHPKPKGFMGLVKT
RKLFCHCGLDWGIVASYLTIQNLPVLKIESFVVKNCVTEQQRYYRKWRDVTFSMKTFELT
DIADSWNPLLEDQ
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagttggagaagagcaatctacagaggtgtagtaaatacgtgattcatattttg
cgaccgtcttacgtcaaaggcttcatgacaacttacctgcaaccagaggttgcagagagg
atcctatcagaggagagtaagtctgtgacggcagcagcccaggtgtttctagaccaggtg
tgtctcctggacgaactgggatggtaccaggccctgctagatgccctggaagcagaagac
tataagggtctgtgtgaggccctgaaggggtgggactttcagaccctggagagcaccaag
gaacacagagtgcttctggaccgaatagaaccccgcttcacaaaactgatcaaacccaga
gacctgctgctacacctgggagattgtctcagaaagagagagtgtgaagagatactggcg
atagagaacctgaaggggcaaatagcagcagcagagaggctgactgactgtctgaagaga
agtgataaacaaaactggttcaaactgctgaagtcggcgctgttctcctgtgaactgact
gaggccctgcagctactggaacctgacacagagtcatccatgtcaaagatggaagtgggt
gatgaggaggagggtgaaaccgtgatgactgtctccttccagtacactgagcagtctgac
gatgacgatgggatgctgatgagcagcaatcccttgacaccctctgaaaccccgcccacc
tctgcaacaggagccactagtggtgttggtgaagtccagaaaggaggagagaagaggctg
agagaggaggaggagagaggaggaggagaaaagagtagaggaggagagaagaaaatgaga
gagtatcagagagagctggctgaaccggtgtttcagggcaagaacacagtcatctgtgcc
ccaaccggctgtgggaagacggtggttgccctggcgatctgtgagcagcacctgaaggtt
aagggtaagggggcgaaggtcgtcttcatggcaaccaaggtggacgtcttcaaccagcag
tataaactgttccaggaacatttccaagagaaagaccctgacatcaggatcgacggtctt
tgcggtaaccagggcgaccagctgtcgatgaaggtggtaatggagaacaatgacatcatc
gtcttaacccctcagatcctggtgaatgccatggcccgaggggaggttccctctctctcc
tgcttctctctgttgattctagatgagtgtcacaacaccacagggaaacacccctataac
atcatcatgacctcatacctggatgccaagctcagcacggagcagaacggacaacacctg
ccccagattgtgggtctgacggcctcagtggggattggctcgttcaagaaccaatcagag
gctgagaacaacatctgtcagctgtgtgccagtctggacagccgcatcatctccaccata
cacacaaacactgacgagctacagtcctacgtgcacacacctgacaaagagttcttcctg
gtccagaagagacacatagaccctttcatcaggatcattcatgacatcatggctaagata
gaaggactggccaagactgtctacaacatagagtccttgtcatccatagagaatcgtgac
tacggcagtcagaagtatgaacagtggatcgttgatgttcagaagaaatgcagagttcta
cagctgaaagaccaggaggaggagagtagagtctgtagggctctgtacaactacactgag
cacctgaggaagtacaacgatgcgttgatcatcaacgaggatgccaggactaaggatgcg
ctagagtacctgtcatctttcatacagcaggtgaagaacgcaggtcacgacaagacggag
agacaactcaccgcttacttcgatggtcagcagggtgtactgcggggtttgtccagcggg
ggcnagaaggagaatcctaaattagacatgttacaatacatcctcgaggaacagtatcga
cagaatgatgagaccaagtctgtgctgttcgttaggacacgggccctcgcagacgccttg
aagagctggatggaggagtctgactctctgaagttcctgaaaccaggagtactgattggg
agaggacgcaagtccagccagctgactggctcaggcatgacgctgaactctaagaaaggt
gtgctggattcctttaagagttttgacaatcaaagcaagatcctgatcgctacttcggtg
gccgacgagggcatcgatatcccacaatgcaacctggtattgatgtacgaatacgttggc
aatgtggtcaagatggtccaagtcagaggccgcggcagggcccagggcagcaagtgtatc
ttggtgtctgataaaaaggacaggattgataaagagaaacataacatggagaaggagaag
attgtagagagggccatcaggaacctacaggacacacctactgagatgctccgcaagatg
gaggtgtttcagcgtggggacaaggtgtgtcgtgacatggtgaagatggtaccagagaga
ccccggactgaaggcagctaccagctcctctgctccaagtgtaaaaaacacagctgttac
acagacgacatcagagtactgcaggattctcaccacatcgttttggaccccactctgttc
tctcgagctcgaacagaacctcaccctaaacccaaaggtttcatggggctggtgaagacc
aggaagctgttctgtcactgtggactggactggggcatagtggcgtcatacctgaccata
cagaatctgcctgtgttaaagatagagagctttgtggtgaagaactgtgttaccgagcaa
cagaggtactacagaaaatggagagacgtgaccttttccatgaagacctttgaacttaca
gacatagctgatagctggaatccattgcttgaagaccagtaa
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