Oncorhynchus tshawytscha (Chinook salmon): 112240771
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Entry
112240771 CDS
T05605
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112240771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112240771
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
112240771
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
TDP-43_C
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
112240771
NCBI-ProteinID:
XP_042159503
UniProt:
A0A8C8IT30
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Position
LG22:13573..25528
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AA seq
399 aa
AA seq
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MAELYIRVAEDENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRNPVSQCMRGVRLVEG
ILHAPENDWGSLVYVVNYPKDNKRKMDEMDAASAVKMKRSIEKTSDLIILGLPWKTSEQD
LKDYFATFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQSKVISQRHMIDGRWCDCKLPN
SKAGPDEPMRSRKIFVGRCTEDITTDELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQV
ASALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGAGAFGGQGYGGGRGGIGSSGSSGVN
FGGLSLNPAMMAAALQSSWGMMGMLANQQGQTNSAGTAAAGQTSATRDQSQAYSSNSTSY
SSPSSASLGWAAGTNSASGSGFSSGFGTSMESKSSGWGM
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcagagttgtacattcgcgtggcagaggacgaaaacgaagagccaatggagatccca
tcggaggatgatgggactgttttgctgtcaacggttgcagcccagtttcccggagcgtgc
ggcctacgttacaggaaccctgtgtctcagtgcatgcgaggcgtccgtctagttgagggt
atcttgcatgcacctgagaatgactggggtagtctggtgtacgtcgtcaactacccaaaa
gataacaaaaggaaaatggatgaaatggatgctgcctctgcggttaaaatgaagaggagt
attgagaaaacatcagacctcattatccttggtttgccttggaaaacatctgagcaagat
ttgaaagactacttcgccacttttggagaagtcatcatggtgcaggtcaaaagagatgtt
aagactgggaactcaaagggttttggttttgttcggttcactgagtacgagactcaatcc
aaagtgatttctcagcgacacatgattgacggaagatggtgtgactgcaaactacccaac
tctaaggcaggtcccgatgagcccatgcgcagccgtaaaatctttgttggccgctgcaca
gaggacataaccactgatgagctccggcagttcttcatgcagtatggcgaggtcactgat
gtcttcattcccaaacccttccgggctttcgcctttgtgactttcgcagatgaccaggtt
gcttcagccctgtgcggagaggacctgatcatcaagggtgtcagcgtgcacatctctaac
gctgagcctaagcacaataatagtaggcaaatgatggatcgtggggctggtgcgttcggg
ggccagggctatggcggtggtcgtggagggatagggagcagtggcagtagcggggtgaat
ttcggggggcttagccttaacccagccatgatggccgccgctctgcagagcagctggggc
atgatgggtatgcttgctaaccagcagggtcagaccaattcggcaggtaccgccgctgcc
gggcagaccagtgccacccgggatcagagccaggcctatagttctaatagcacaagttac
agcagccccagctcagctagcctagggtgggctgcaggcaccaactctgcctccggcagt
ggcttcagctctggatttggcacctctatggagtcaaaatcatcaggttggggaatgtag
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