Oncorhynchus tshawytscha (Chinook salmon): 112242395
Help
Entry
112242395 CDS
T05605
Name
(RefSeq) guanine nucleotide exchange protein smcr8a isoform X1
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112242395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112242395
Membrane trafficking [BR:
otw04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
112242395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCR8_C
Folliculin
RecX_HTH3
Motif
Other DBs
NCBI-GeneID:
112242395
NCBI-ProteinID:
XP_042170026
UniProt:
A0AAZ3QI96
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
MIGSPDVLAFTSEGDLGGYPDVQVLPEEFSLPLLPLSHPWTSPAHFNRDFILVAEFSEQV
GPLPVRTIPDDPRVIGSFDLNHFSLRIMSVDYQAAAPGPQPHHQTASPSLQTLPRLAFSE
DSRVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYVSADERKIMLQFQELSLRFSRA
SECLKTGNRRAFARELQRKLHDLEYTRSILQAALQRISNESAEIREEAELQKTANELASV
DRSILDHRSLLHQVTSYPNRKLKDPGFLPYDPSLIPETLPLTPDPPSPSYTPQLVSGASL
GGGGWSARRFDRRLKPLEELSDCYFLSLTLEQLGNAERRLRGDQSVLHNRRITHRLSRTL
SHTQFLFQLWDQEEEEDLEEEGAGLEGGSGMMSHPVAGAGPPSLESFFSCVEEVSIKLET
GSGGAEPTLDPEGVTAETRPGSASSGDSIEVLGTERSYRTQGLTHVELRELSGGLGQGEG
CDVVRSCAPAEVWMRRDMRSLARRANSEDSIEIISTSDSIFPDDLIFNAITEEEPEEHGI
MGSVIKEEEEEAAGEDTPIQQHSTLGIVVHEEEQTRHQRILGNIVQMEGKEELEDTPTRL
HRTLGIEVRELEEEKPERWDTPAPLSEPQRTLVHQVSVEGSSQQYEGHHANGEVRGQAGR
DSRRVVVPDLQVNFSIPLRLDVRGRGSGGRRLLGDTPYRLSVDEASDCMSNISTSPSSSL
PPTHLHGNHSASNPRRHQRQRRKAGPGALRFLRQNSFSQNAVFCLLSGRPLVVIGGEEGS
VRRTVAALSLYLPSPGRYGDAVQPYLATPLQLTDLLTWRLIGIHRTSPTAPSMLHSLARY
GRYLAVLDLDQRTLRSPAYHGHLIGRLANPHTLIGRGSTYLLHVESCLAELTAKAFLFSC
SPDLSTLTSGRAQSSPGGQAPPICHSHSDLQLPSLPREDDDFTLTQRRRDFLCGRGFSGE
DDLRVMHFLSDLIKQHHAGSGPPALRFSYSAVPLHRNTTT
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgattggatctcctgatgtgctggccttcaccagtgaaggggatttgggggggtaccca
gacgtccaggtcctgccagaggagttctccctccctctccttcccctctctcacccctgg
acctcccctgcccatttcaacagggacttcatactggtggctgagttctcagaacaggtg
ggtcccctaccggtccggaccatccctgatgaccccagagtgatcgggtccttcgacctg
aaccatttctctctacgcatcatgtctgtcgactaccaagccgcagcgcctggtcctcag
ccacaccaccagacagctagtccttccctccagaccctcccccgtctggccttctcagag
gactccagggtggttctgggtgactctaaggagggggcgtttgcctacgttcaccacctg
acgctctatgacctggaggcccggggcttcgtccgcccgttctgcatggcctacgtctct
gccgacgagaggaagatcatgctgcagttccaggagctgtcgctccgcttctcccgcgcc
tccgagtgcctgaagaccggaaaccgacgggccttcgcccgcgagctgcagaggaagctt
catgacctagagtacacacgatccatccttcaagcagcgcttcaaaggatatccaatgag
agtgcggagatcagggaggaggcggagcttcagaagacggccaacgagcttgctagcgtg
gatcgttccatcctggaccacagatccctcctccaccaggtcacttcctatcccaacagg
aagttaaaagacccaggctttctgccctacgacccctccctgatcccagagaccctcccc
ttgactcctgatcccccctccccctcatacaccccccagctggtttccggggcgtcgcta
gggggcggaggctggtcagcgaggcggttcgaccgccgtctgaagccgttggaggagctg
agcgactgctacttcctgtctctgacgctagaacagctgggcaacgcagaacgccgtctc
cgtggagaccagagtgttctacacaaccgtcgcatcacacacaggctctccaggacgctt
tcacacacacagttcctgttccagctctgggaccaggaggaggaggaggacctggaggag
gagggggcggggctagagggaggaagcggcatgatgtcacatcctgtggcgggggcggga
ccaccgagcctggagtcgttcttctcctgcgtggaggaggtgtcaatcaaactggagaca
ggaagtggaggggcggagccgacacttgatcctgagggagtaaccgcggagacgagacca
ggcagcgcgagcagcggagacagcattgaggttctggggacggagcgctcgtatagaaca
cagggactaacccacgtggaactcagagagttgtctggtgggttgggtcagggtgaaggc
tgtgatgtggtgcggagttgtgcccctgcggaggtgtggatgagacgtgacatgcggtcc
ctggcacggagggcgaacagcgaggacagtattgagatcatcagcacctcagactccatc
ttccccgacgacctcatcttcaacgccatcacagaggaggagcctgaggagcatggaatc
atgggtagtgtaatcaaggaagaggaggaggaggcagcaggtgaggacacgcccattcag
cagcacagcaccctgggtattgtagttcacgaggaggagcaaactcggcaccaaagaatc
ctgggtaatatagtccagatggagggaaaggaggagctagaggacactcccactcggctg
caccgcaccctgggtattgaagtccgggaattggaggaggagaagccagagagatgggac
actccggcccccttgtctgagccccagagaactctggtccaccaggtgtcagtagagggc
tcctcccaacagtacgagggtcaccatgccaacggcgaggtcagaggtcaggctgggcgt
gacagcaggcgggtggtggtgcctgacctccaggtgaacttttctatccccttgaggtta
gatgttagaggtcgggggtcaggggggcggcggttgctaggcgacaccccttacaggctg
agtgtagacgaggcatcggactgtatgagcaacatcagcacctctccatcttcctctctg
ccccccacacatctccatggcaaccacagcgctagtaatccgcgacgacatcagcgccag
aggaggaaggcgggtcctggagccctcaggttcctgcggcagaattccttctcccagaat
gccgtgttctgcctgctaagtggacggccgctggtggtgattggtggagaggagggttcc
gtgaggaggacggtcgctgccctctcgctctacctgccctcacctggtcgctatggagat
gctgtgcagccttacttggccacgcctcttcagctgacagacctgctcacctggagactc
atcggaatccacaggacgtctcctacagctcccagcatgcttcactctctggctcgttac
ggacggtacctggccgtgctggacctggaccagcgtacactgagaagccccgcctaccac
ggacacctcattggccgactggccaacccccacactctgataggtcgtggcagcacctac
cttctccacgtggagagctgcctcgctgagctgaccgctaaggccttcctgttctcctgt
tctcctgacctttcaactctaacatcgggtagagctcagagttcacctgggggtcaggca
ccacccatctgccacagccactctgacctccagcttcccagcctccccagggaggacgat
gacttcacgctgactcagcgtcgcagggacttcctatgtgggcggggtttcagcggggag
gatgacctccgggtgatgcacttcctgtctgacctcatcaaacagcaccacgcaggaagt
ggtcctccggccctccgcttctcctacagtgccgtccctttacatagaaacaccacaaca
tag
DBGET
integrated database retrieval system
