Oncorhynchus tshawytscha (Chinook salmon): 112244209
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Entry
112244209 CDS
T05605
Name
(RefSeq) rho guanine nucleotide exchange factor 1-like isoform X1
KO
K12330
Rho guanine nucleotide exchange factor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04270
Vascular smooth muscle contraction
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
112244209
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
112244209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112244209
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112244209
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Ortholog
Paralog
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Motif
Pfam:
RGS-like
PH_16
RhoGEF
PGDH_C
Motif
Other DBs
NCBI-GeneID:
112244209
NCBI-ProteinID:
XP_042164964
UniProt:
A0AAZ3P100
LinkDB
All DBs
Position
LG03:7889008..7950463
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AA seq
1049 aa
AA seq
DB search
MSIIGAEDEDFENDLDPTVDDHSSHFTSIELVKSRPTHLLVFLQHVILQFDCSSLLCYLH
ADLFKNLSTKETKKQFVEFYNSFLDKGAILRVQIPHNVSFELDRTRPDLLSEEQQRKFVQ
DVQLAQAPEVLRQLEDFRQKRMMGMTPNAAELLEVESHYPTDRIPMEMKEKAVAETLLDK
MSEIHPSIVADEEKCSSIFAAVAFYMKHLGVKSRVADSKKSRGFFRRPLGKNKKSEESTK
SKPKGGFPNILSAAGGWIAGSTEVKLPKVEAEVDKEKVNQERKVSSGLAPSRGSSASDAA
PPALNRKSVSTGSSPHQGLEVSEGSGVHISVTSSPDFSHSEMGLFSSRSDPQLVAEGGEV
SPAGMAGGLAVWEPPSPNEPPLEENLDKDRRKTRRVGRSESARVDRHSSRRRGSSRAKQS
RSRSDVDLQAAATAAHSSPTSPRPSVDEGVLLPEGVLPGLSLSGPTPQQEEQDPRLLELE
QDPPNWREHTPPDTLKDLSKKETKRQEVINELFATEHAHVRMLSVLQTVFWKPLEREELM
TATELATIFPSLDEIIDMHYAFYEHLKKLRQHNFIVKAIGTTLLNRFGGTEGEWFQKLTS
RFCSHQTWALEQLKMRQKKDPRFNSFILEAESRPQCRRLQLKDIIPTEMQRLTKYPLLLE
NIAKCTEDTLEKESIQQSAECCRKILNHVNEEVKQMENLLTLKDYQRRLDTSGLKPSNEL
YLEYKYLDLAQRRMIYEGPLTWRVTKEKTLEVQCVLLGDLLVLLQKQDDKMVLKCQSKSN
IAVQEGKQMLSPIIKLDSAFLREVATDRKAFYVIFTWDSGAQIYELVAQSVGERRNWTDV
IKMAVDELKKTGPPSDLKRGNSILPGGGGNPYSPTTFPQPPLSPTENGGVLLKNSIERDK
DILTDEMKSVDSPHSLIDYLSDKGFDLIGHSNSDQVKVANSALNEVMSLKRLLVGSISLS
DNSQPDEENGREEPERQDQGLQGEEGGGMKIEEERGISAPLVLSQERMEEVCRKLQSLEV
QLKRLQSVEEEHHRLQKALSKFSLEGGNF
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcatcggggccgaggatgaggactttgagaatgatctggaccccacggtggat
gaccacagcagtcacttcaccagtatagagctagtgaagagtcggccaacccacctgctg
gtcttccttcagcacgtcatcctgcagttcgactgctcctccttgttgtgttacctccat
gctgacctcttcaagaacctcagtaccaaagagacaaagaagcagtttgtggagttctac
aacagcttcctggacaagggcgctattctcagagtgcaaatccctcacaatgtatcgttt
gagttggaccgtaccagaccagacctgctcagtgaggagcagcagaggaagtttgtccag
gatgtccagttggctcaggccccagaggtgctgcgacagctggaagactttaggcagaag
aggatgatgggtatgacccctaacgcggcagagctgctggaggtggagtctcactacccc
actgatcgtatccccatggagatgaaggagaaggctgtggcagagaccctgctggacaaa
atgtctgagatccacccctccatcgtcgcagacgaggagaaatgttcgtcgatctttgca
gcagtggccttctacatgaagcacctaggagtgaagtccagggtagctgacagtaagaag
tccagagggttcttcaggagaccccttgggaagaataagaagagtgaggagtccactaaa
tctaaaccgaaggggggttttcccaacatcctcagcgccgccggtggctggattgctggc
agcactgaggtcaaacttcctaaagtggaggctgaagtggataaagagaaggtgaatcag
gagcgtaaggtttccagcggcctcgccccctctcgaggctcctccgcctctgatgctgct
cctccagcattaaacaggaagtctgtttcaacaggatcctccccccatcagggtttggag
gtcagcgagggctcaggggttcacatcagtgtgacctccagcccagacttctcccacagc
gagatgggtctgttcagcagtcgttcggacccccagttggtggcggaggggggcgaggtg
tcccccgcggggatggcaggggggctggctgtatgggagcccccctcacccaatgaaccc
cccctggaggaaaacctggacaaagacagacgcaagacaaggcgtgtaggacgcagtgag
agtgctcgcgtggacagacattcctcccgtcggcgtggctcctcccgggccaaacagtcg
cgttcccgtagcgacgtggacctgcaagccgccgccacggcagcacactcctccccgacc
tctccccgtccctctgttgatgaaggggtgttactgcctgagggtgtgctcccaggtctt
tccctctctggccccaccccccagcaggaggaacaggaccctcgcctcctggagctggag
caggacccgcccaactggagagaacacacccccccagacacgctcaaagacctcagcaag
aaggagaccaagcgacaggaggtcatcaacgagttgtttgcgacggagcacgcccacgtg
cgcatgctgagtgttctgcagacagtgttctggaagcctctggagagagaggaactcatg
accgccacagagctggccaccatcttccccagcctggatgagatcatagacatgcactat
gctttctacgagcacctgaagaagctgcgtcagcacaatttcatcgtcaaggccatcgga
accacgttactcaataggtttggagggacggagggtgagtggtttcagaagctgacgtct
aggttctgtagtcaccagacgtgggccttggaacagctgaagatgagacagaagaaagac
cctcgtttcaactccttcatactggaggcagagagtaggcctcagtgtcgtaggctgcag
ctgaaggacatcatccccactgagatgcagaggctcaccaaataccccctactgctggaa
aacattgccaagtgcacagaggacaccttggagaaggagagtattcagcagagtgcagag
tgctgtaggaagatcctcaaccacgtcaacgaggaggtcaaacagatggagaacctgctg
accctgaaagactaccagcgcaggctggacacctcaggactcaaacccagtaacgagctg
tacctggagtacaagtaccttgacctggcccagagaaggatgatctatgaggggcctctg
acctggagagtgaccaaggagaaaactttagaagtgcagtgtgtgttgctgggggatctg
ttggtgctgttacagaagcaggatgataagatggtgctgaagtgtcagagtaagagtaac
atcgctgttcaggagggcaagcagatgctcagccctatcatcaaactagactctgccttc
ctccgagaggtggccacagaccgtaaggctttctacgtgatcttcacctgggacagcggg
gctcagatctacgaactggtggctcaatctgtcggggagaggaggaactggacagatgtg
atcaagatggcagtagatgagctgaagaagacaggacctccatctgacctgaagagagga
aacagcatcttacctggaggaggaggaaacccatacagccccaccacgtttcctcaaccc
ccactcagccccactgaaaatggaggagtcttgttgaaaaacagcattgaacgagataag
gacatcctgacggatgagatgaagtctgtggactctcctcattctctgattgattacctc
tcggacaaaggcttcgacttgattggccacagcaacagtgatcaggtgaaagtggccaat
agcgcgttaaacgaagtcatgtccctcaagaggctattggttggcagcatcagcctatca
gacaactcacagcctgatgaggagaatggaagggaggagccagagaggcaggaccaagga
ctacaaggggaggagggtggagggatgaagatagaggaggagagagggatcagcgctcct
ctggttctgtcccaggagaggatggaggaggtgtgccggaaactgcagagtctggaggta
cagctgaagagactgcagagtgttgaggaggagcaccaccggctgcagaaggccctgtct
aagttctccctggaggggggaaacttctag
DBGET
integrated database retrieval system
