Oncorhynchus tshawytscha (Chinook salmon): 112246044
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Entry
112246044 CDS
T05605
Name
(RefSeq) integrator complex subunit 1 isoform X1
KO
K13138
integrator complex subunit 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112246044
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
112246044
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
INTS1_INTS2-bd
INTS1_RP2B-bd
INT1_R3
INTS1_R4
CBP1_cbp8
Cnd3
HTH_RNase_II
Cnd1
Motif
Other DBs
NCBI-GeneID:
112246044
NCBI-ProteinID:
XP_042163222
LinkDB
All DBs
Position
LG27:10286860..10306159
Genome browser
AA seq
2207 aa
AA seq
DB search
MMNRPKPTTIRRPSAAKPSGHPPPGDFIALGSKSGGESKAPAVLLKPASTLPTDRKRETS
SSLPSSSGLSGLVKRPKISSTPPVSALGRLADVAAVDKRAISPSIKEPSVVPIEVPPAVL
LDEIENAEQDGNDDRIEGVLCGAVKQLKMNRAKPDITLYLSLMFLAKIKPNLFATEGIIE
ALCSLLRRDASINFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVD
SSHCKNFVDNIQTAFSTKMPPKSMLLQLQTDTGRSGGDISAGSSPHPSTPDEDDSQTELL
IAEEKLSPEDDGQVMPRYEELSESVEDYVLDVLKDQLNRRQPMDNVSRNLLRLLTATCGY
KEVRLMAVQRLEMWLQNPKLTRPAQDLLMSLCMNCNSHGADDMEVISNLIKIRLKPKVIL
NHYMLCVRELLNAHKDNLGTMVKLVIFNELSNARNPNNMQVLHTLLQHSPEQAPKFLAMV
FQDLLTNKDDYLRASRALLREIIKQTKHEINFQSFCLGLMQERKEATYVDMEFKERFVIQ
VTDLLTCSMMLGITAQVKEAGVAWDKGEKKNLDGLRSFQNNIAAIQRDAVWWLHTVVPTI
AKVPSKDYIHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPLLEDTLMRILVIG
LSRDLPLGPADAMELADHLVKRAAGVQSDGTTSATAMDLDVLRVERIQLIDAVLNLCTYH
HPENIQLPAGYTPPNLAIATLYWKAWLLLLVVAAFNPQQIGLAAWDGYPTLKMLMEMVMT
NNYSYPPCTVADEETKTEMINRELQVSQREKQEILAFESHLAAASTKQTITESNSLLLSQ
LTSLDPQGPPRKPPPAVQEQVKSLNHSLRLGHLLCRSRNPDFLLNIIQRQASSQSMPWLA
DLVQSSEGSLDVLPVQCLCEFLLHDAADDNLPIEDDEEGESKEQRAKKRQRQQKQRQLLG
RLQDLLLGPKADEQTTCEVLDYFLRRLSSSQVASRVLAMKGLSLVLTEGGLKDGEERDQP
MEEDSRDAELLPGYQWLLQDLPKLPLFDSVRGMTSTALQQAIHMETDPQTISAYLIYLSQ
HAPVEEQASHNDLALDVARLIVERSTIMNSLFSKYSCRPESDAVLSALISIFSSYIRRMR
KTKEGEDLYSWSESQDQVFLRWTTGETATMHILVVHAMVILLTLGPPKEESDFFNLLDIW
FPDKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVARLVDAALQDLEPQQLLLFVQSFGI
PVSSMSKLLQYLDQAVSHDSQTLEQNIMDKNYMAHLVEVQHERGATGGHTFHGLLSSSLP
PRRDSTEVNRAKVTMETPSGSLKMRANQIPVIGPEDDLTGMLLQMFPLKVDLRRPSPPPR
PLSLAMQQALAQELVRARQGGHPQQGGVAVRLLQALAALLNSAHAGALVMAMNRSHALSC
PMLRQLHLYQRLVSQDVAFSSLFFKAVMEMMTWLENPAVEVGPLRALLKSFAGQYSQKHR
LTDVRTGFLHLAEALAYRRDSEVAVRAIIATLKAGERCNAEPELIGKVLQGLVEGKSPYL
EELLALLMTIGTETGTGSTTAGPVAMVIALLLQETDERAVKMEVDTNNSSSEVTKTGSSS
GLLVDWLGLLDPEVTSVCPDLQRKLLFALNKGKGTPSYRPYLLALLTHQSNWTTLHQCIS
ALLSKQQDQQLDPSSALDFLWACSHIPRIWQGRDQKTPQKQTDTFVLRLNPEELISLVDL
IMSESELNSRGDSSPPTNTPGNVKSILDQTSCSLIQSRLPLLHSCCHGDLERVKKVSEYL
INCTKKWGDSVMSKRCQNLLLQLYLHFPEVIQHVTLPDATLSSEGAADGTTCKHDVLVHR
LVTLLGDTGDTKSAENRMSDANLACRKLAVSHPVLLLRHLPMIGALLHGRIHLNFQEFRS
QNHLTFFSNVLAILELLQPLVFHSEHQRALQDCLLSFMKILQNLRRPRMHPLAVFSKYVQ
FIQKYITHDAASAIPYLQKHSDILQGLSSEHPDLLLKSLLAGLTLPVKTGSSDSSAEDRD
DESSSGSLPMVSISASVPLTAADMTKYLKKISRGEAIEDVLEVLTEVEDKSKRNPEIIQY
FTNDLRRLMTSTEELCRNMAFSLALRCIQNNPCTAADFLPTFMYCMGSGNFDVVQTALRN
LPEYVLLCQEHADILLHKAFLVGIYGQIDTSSMISESMKVLHMEATT
NT seq
6624 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatcgtcccaagcctacaacgattaggcggcctagtgcagcgaaaccctccggt
caccctcctccaggagatttcatagcattggggtcaaagagtggcggagagtccaaagca
cctgcagttctccttaaaccagcatccaccttacccactgaccgtaaacgagagacctcc
tcgtcacttccatcctcctctggcctgtccggcctagtgaagcgccccaagatctcctct
acccctccggtcagcgccctaggacgattggctgatgtggcagcagtggacaaaagggct
atatcgccttcgatcaaggagccctcagtggtgcccatagaagtccccccagcagtgctc
ctggatgagattgagaatgcagagcaggatggaaatgatgatcgcattgaaggggtgctc
tgtggagctgtcaaacagctgaagatgaaccgggccaaacctgacataacactgtacctc
agcctcatgttcctggccaagattaagcccaatctgtttgccactgaaggcattattgag
gccttgtgcagtctccttcgccgggatgcctccatcaacttcaaagcaaagggcaacagt
ctggtgtctgtgctagcctgcaacctgctgatggcagcctatgaggaggatgagaactgg
ccagagatctttgtcaaagtgtacattgaggattctttgggggagcgaatttgggtagac
agttctcattgtaagaattttgtggacaatatccagactgccttcagtaccaaaatgccc
ccaaagagtatgctgctgcagttgcagactgacactggccgctccggtggagatatcagt
gcagggagcagtcctcacccctccaccccagatgaggatgacagccagaccgaattgctg
attgctgaggagaaacttagccctgaagatgatggacaagttatgccaaggtacgaggag
ctgtctgagagtgtggaggactatgttctagatgtcctgaaggaccagttgaaccgcagg
cagcccatggacaatgtgtcccgtaacctgctgcgtctgctcactgccacctgtggctac
aaggaggtgcggcttatggctgtgcagaggctggagatgtggctgcagaatccaaagctg
acccgtccagctcaggaccttctcatgtctctctgtatgaactgtaactcccatggagcg
gacgacatggaggtgatctccaacctcatcaagatccgcctgaaacctaaagtcatcctc
aatcactacatgctctgtgtcagggagctactgaatgcacacaaagacaacctgggaacc
atggtgaagctggtgatcttcaacgagctgtccaatgccaggaaccccaacaacatgcaa
gtccttcacacactgctccagcacagcccagagcaggcccctaagttcctggccatggtg
ttccaggacctgctgaccaataaggatgattacctgcgtgcctctcgagccttgctgaga
gagatcatcaaacagaccaagcacgagatcaacttccagtccttctgcctgggtctgatg
caggaaaggaaggaggccacctatgtcgacatggagttcaaagaacgctttgtgatccag
gtgacagacctgctcacgtgctccatgatgctgggcatcacagctcaggtcaaggaggct
ggcgttgcgtgggacaaaggagagaagaagaatctggatggtctgagatcctttcagaat
aatatcgctgccattcagagggatgctgtgtggtggcttcacactgttgttcccactatt
gccaaagtgccatccaaggactatatacactgtcttcacaaggtgcttttcacggagcaa
ccagagacctactacaagtgggataactggccccctgagagcgacagaaatttcttcctg
cggctgtgctctgaagtgcctctgctggaggacactctaatgcgcatcctggtcatcgga
ctgtcccgtgacctgcctctgggcccggccgacgccatggagctggcagaccacctggtg
aagagggcagccggtgtccagtccgatggtacaacatctgcaacagcaatggatctggat
gttttgagagtggagcggatccaactgattgacgcagtgctgaacctgtgcacctaccac
cacccagagaacattcagctgcctgcgggctatactcctccgaacctggcgatagccaca
ctctactggaaagcgtggctcctgctacttgtggtggccgctttcaatccacagcaaata
ggcttggctgcctgggacggctatcccacactgaaaatgctcatggagatggttatgaca
aataactactcctatcctccatgtacggtggccgatgaggagaccaagaccgagatgatc
aaccgggagctgcaggtatcccagagagagaagcaggagatcctggccttcgagagccac
ctggcggctgcctccaccaagcagacaatcacagagagcaacagcctacttctgtcccag
ctcaccagtctggacccacagggcccccctcgcaaacccccacccgcagtccaggagcag
gtgaagagccttaaccactcccttcgcctgggtcacctcctctgtcgctctcgcaaccct
gacttcctgctcaacatcatccagagacaggcctcctctcagtcaatgccctggctggct
gacctggtgcagtccagtgaggggtccttggacgtgctgcccgtgcagtgcctgtgtgaa
ttcctgcttcacgatgctgcagatgacaacttgcccatcgaggatgacgaggaaggagag
agcaaagagcagagagccaagaaaagacaaaggcaacaaaagcagaggcagctccttgga
cggctgcaggatctgctgttgggtcctaaagctgacgaacagaccacgtgtgaggtgttg
gactacttcctgcgccgcctcagctcttctcaagtggcgtcaagagtcttggctatgaag
ggtctgtcactggtgctgactgaggggggtctgaaggatggagaggagagggaccagccc
atggaggaggactccagagatgctgagctcctgccagggtaccagtggctcctgcaggac
ctccccaagcttcccctgttcgacagtgtccggggcatgacctccaccgctctgcagcaa
gccatccatatggagacagacccacagaccatcagcgcctacctcatctacctgtcccag
catgcaccagtggaggagcaggcatctcacaatgacctcgctctggatgtggcccgtctg
attgtcgagcgctccactatcatgaacagcctgttctccaagtactcctgccggcccgag
tcagacgctgtgctctcagcactcatctccatcttctccagctacatcaggaggatgagg
aagaccaaagagggagaggacctctacagctggtcagaatctcaggaccaggtgtttctg
cgttggaccacaggggagacggccaccatgcacattctggtggtccatgccatggtcatt
ctcctgacgctcgggccacccaaagaggagagtgacttcttcaatctcctggacatctgg
ttccccgacaagaaacccctccccaccgccttcctggtggacacctccgaggaggccctt
ctgctacctgattggttgaagctgaggatgatccggtcagaggtcgcacgattggtggat
gcagcgctgcaggatctggagccccagcagctgctgctgtttgtccagtcgtttggcatc
cctgtgtccagtatgagtaaactgctgcagtacctggaccaggctgtatcccacgactca
cagacactggaacagaacatcatggacaagaactacatggctcatctggtggaggtgcag
catgagcgaggcgccacaggggggcacaccttccacgggttgctcagctcctctctccct
cctcgcagagatagtactgaggtgaacagagccaaagttaccatggaaactcctagtggc
tccttgaagatgagagccaatcagatcccagtgattgggcctgaggatgacctcactggc
atgttgcttcagatgttccctctgaaggtggacctccgcaggcccagcccccctccccgg
cccctctccctggccatgcagcaggctctggcacaagagctggtgcgtgccagacagggg
gggcacccccagcagggtggggtggcagtgcgtctcctacaggccctggctgccctgctc
aactctgcccacgccggggcactcgtcatggccatgaaccgcagccacgccctgtcctgc
cccatgctgcgccagctacacctctaccagcggctggtgtcgcaggacgtggccttctcc
tctctcttcttcaaggctgtcatggagatgatgacatggttggagaacccggccgtggag
gtggggcccctgcgggccctgctcaagtcctttgctggacagtattcccagaagcaccgg
ctcactgatgttcgtacaggcttcctccacctggctgaggccctggcttatcggagggac
tccgaggtggccgtgagggccataatcgccacactgaaggcaggggagagatgtaacgca
gagccggaactgataggcaaagtgttacaggggctagtggaggggaagtctccatatttg
gaggaactgctggccttgctaatgactattggaacagagacggggaccggctctaccacc
gcaggccctgttgccatggtgatagcgctgcttctccaggagactgacgagcgagccgtg
aaaatggaggtggatacaaacaacagcagctctgaggtgacaaagactgggtccagctca
gggctgcttgttgattggctgggacttcttgaccctgaggtcacatctgtgtgcccagac
cttcagcggaagctgctctttgctctcaacaagggtaaaggaactccctcctacagacca
taccttctggcattgctgacccatcagtccaactggacaactcttcatcagtgcatcagt
gctcttctcagcaagcagcaagaccagcaactggacccatcttctgctctggacttcctg
tgggcctgcagtcacatccctcgtatctggcagggtcgggaccagaagaccccacagaaa
cagacagatacgtttgtcctgcgtttgaacccggaggagcttatcagtctggtggacctc
atcatgtcagagtctgagctcaacagccgcggcgactcctcgccccctaccaacaccccc
ggcaacgtcaagagcatcctggaccaaacctcctgctccctcatccagtcacggctgccc
ctgctccacagctgttgccatggcgacctggagagagtgaagaaagtctcggaatacctc
atcaactgcacaaagaaatggggagacagtgtgatgagtaagcggtgccagaacctcctg
ctccagctctacctgcacttcccagaggtcatccagcacgtgaccttacctgacgccacc
ctgagcagcgagggggctgccgacggcaccacatgcaagcacgacgtcctggttcaccgt
ctggtcacgttgctaggcgatacaggagacacaaagtcggctgagaaccggatgtcagac
gctaacctggcctgcaggaaactggctgtgtcccacccggtcctcctcctcagacacttg
ccgatgattggagcgcttctccatggacgcatccacctcaacttccaggagttccggagc
cagaaccacctgacattcttcagcaacgtgctggccatcctggagctgctgcagccgtta
gttttccacagtgaacaccagagggcgctgcaggactgcctgctctccttcatgaagatc
ttgcagaacctcaggagacctcgtatgcatccgttggccgtcttcagtaaatatgtgcag
ttcattcagaagtacattacccacgatgcagcatcagccattccctatctacagaagcat
tctgatatcctacaggggctctcgtcagagcaccctgacctgctgcttaagtccctgctg
gctggcctcaccctgcctgtgaagactggctcctctgacagctctgctgaggacagagat
gatgagtcgtcctctggttccctgcccatggtcagtatctcggcctccgttccactgact
gcagctgacatgaccaagtacctgaagaagatctccaggggagaagccatcgaagacgtg
ctggaagttctgaccgaggtggaggacaagtccaagaggaatcctgagatcatccagtac
ttcactaatgacctgcggagactgatgacttctactgaggagttgtgccgtaatatggcc
ttcagcctggccctgcgctgcattcagaacaacccgtgtactgccgcagacttcctgccc
accttcatgtactgtatgggcagcgggaactttgacgtggtgcagacggcgcttaggaac
ctgccagaatacgtgctgctctgtcaagagcatgcagacatcttactccacaaggccttc
ttggtggggatctatgggcagattgacaccagctctatgatctctgagtccatgaaggtc
ctgcacatggaggcaacaacatga
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integrated database retrieval system
