Oncorhynchus tshawytscha (Chinook salmon): 112246784
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Entry
112246784 CDS
T05605
Name
(RefSeq) guanine nucleotide exchange C9orf72-like isoform X1
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112246784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112246784
Membrane trafficking [BR:
otw04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
112246784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
112246784
NCBI-ProteinID:
XP_024271088
LinkDB
All DBs
Position
LG08:25284451..25296154
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AA seq
486 aa
AA seq
DB search
MFVPSYHTIYASYKPNTLRLWYSNNMSSGPPQSPAVAKTEVTVEGECPLLAATFAYWDNI
LGPRVRHIWAPRCEQPLLLSDGEVTFLANHTLNGEILRSAECGAVDVKFFVLAEKGVIIV
SLIFDGELKGDKNTCALSIILPQTELAFYLPLHTVCVERLKHIIRKGRIWMQKGYNIISV
LTSEIVPIMELLSSMKTHSVPEDIDIKDTILNDDDIGDSCHEDFLHKAISSHLQTCGCSM
VVGSNPDKVNKIVRTLSLFLTPAERKCSRLCKADSSFKYDTGLFVQGLLKDSTGSFVLPF
RQVLYSPYPTTHIDVDINTVKQMPPCHEHTYNQRLYMRSELSTLWKAASEDDIAPDAVIH
TDESFTPNLNIFQDVMHKDTLVKLFIDEVFMLKPGLNLRSTYLAQFLLILHRKALALLKY
IEDETQKGKKPFRSLRSLKTDLDLMVEGDLNIVMAFAEKLRAGLHSFVFGKPFYTSVQER
DVLMSF
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtgccgtcataccacactatttatgcgagctacaaaccaaatacattgagactt
tggtacagtaacaacatgtcttctggcccacctcagtcgcccgcagtggctaagacagag
gtgactgtcgaaggagaatgccctctcctcgccgccacctttgcctactgggacaacatc
ctaggcccgcgagtgcgtcacatctgggctcccaggtgtgagcagccgctgttgctgagt
gacggtgaagtcaccttcctggccaatcacacgctgaacggggagattctgcgcagcgcc
gagtgtggagcggtggacgtcaagttctttgtcctagctgagaagggtgtcatcattgtc
tcgctgatctttgacggcgagctgaagggtgacaagaacacgtgtgccctgtccattatt
cttccacagacagagctggccttctacctgcccctgcacactgtctgtgtggagaggctc
aaacacataatccgcaagggacgcatctggatgcagaaaggctacaacataatttctgtg
ctgacatcagagattgtccccatcatggagctgctgtcctccatgaagacacacagtgtc
ccagaggacatagatatcaaggacaccatcctaaatgatgacgacattggagacagctgc
catgaagatttcctgcataaggccatcagttctcatctccaaacgtgtggctgctccatg
gtggtcggaagcaacccagacaaagtcaacaagatagtgcgaacactgagccttttcctc
acccctgctgagaggaagtgctctcggctctgtaaagctgactcctctttcaagtacgac
acaggactgtttgtgcaaggcctcctcaaggactccacgggcagctttgtcttgcccttc
cgccaggtgctgtactcgccctacccgaccacgcacattgacgtggacatcaacacggtg
aagcagatgccaccctgccatgagcacacgtacaaccagcgcctctacatgcgctcggag
ctcagcacactctggaaggcagccagcgaggatgacatcgcccccgacgctgtcattcac
accgatgagtccttcacccccaacctaaatatttttcaggatgttatgcataaagacact
ctggtgaagttatttatagatgaggtgttcatgctgaagccaggcctcaatctgcgaagt
acttacttagcccagttcttgctgatccttcacaggaaggctctcgcgctactcaaatat
attgaagatgaaacgcaaaagggaaagaagcctttccgctccttgcgcagcttgaagaca
gacctcgacctgatggtggaaggcgacctgaatattgtcatggcttttgctgagaagctg
agggctggactgcactcctttgtatttgggaagccattctacaccagtgtacaggagcga
gatgtgctcatgagtttttga
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