Oncorhynchus tshawytscha (Chinook salmon): 112247004
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Entry
112247004 CDS
T05605
Name
(RefSeq) low-density lipoprotein receptor
KO
K12473
low-density lipoprotein receptor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03272
Virion - Hepatitis viruses
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
112247004
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112247004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112247004
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
112247004
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Psg1
Motif
Other DBs
NCBI-GeneID:
112247004
NCBI-ProteinID:
XP_042158196
UniProt:
A0A8C8IRN8
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Position
LG20:17262758..17275340
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AA seq
880 aa
AA seq
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MGWLVCVLLVFLACCVVQTNTETVCGIGQFLCGNGKCITLRWVCDDTDDCGDGTDELPGT
CSARTCGTTEFSCGGHLNQCVPSTWLCDGKADCENGADEESCAPKHCTDNKFHCSNGQCV
SASFVCDEELDCDDGSDEASCPPTTCSSTSFQCHNSVCVPRLWACDGDVDCSDSSDEWPQ
NCGTRAPEGAPKPCSLREFQCGSGECIHSSWKCDGGFDCLDRSDETNCSRLTCRPDEFQC
GDGTCIHGGRQCNRQYDCRDLSDEMGCVNVSHCKGPTRFKCRSGECISMEKVCDKQRDCR
DWSDEPLRECDSNECLYNNGGCSHFCNDLKFGYECQCPTGYYLTDKKRCEDIDECANPDI
CSQICVNHMGSYKCECEEGYQVDPATKACKAIGTVAYLFFTNRHEVRKMTLDKSEYTRVI
PHLKNAVALDMDMVAKEIYWSDLSQKKIYSTSMDLAADTAQHKVVIDSDIEAPEGIAFDW
VHGNIYWTDSIRSSISVSTANGSRRKTLFQNDLAKPRAIVVDPHSNFMYWTDWGTPAKIE
KGGLNGGDRAALVTDNIVWPNGITLDLLNQRLYWVDSKLHTLSSIDVQGGGRRTLIIDEH
RLAHPLGVTVFEERVFWTDVSNNAILSANRVTGRDIKPVAEHLVSPEDIVLYHNLKQPTG
RDWCKVANGGCEFMCLAAPQVGLHSPKYTCACPDNMLLAKDMRKCVPAAPTPATPVKPIV
PTSNPPPAPAHTSPAPPARATNKAPIIATTVMPAPPRTTKPVPRNTQPAQPDTPRIPQAQ
TTTVPQVTTQDIRHEFAAIPTAPSTPAALYIALPIAIVCLVAFVAVLLWRNYRLKNTNTI
HFENPVYQKTTEDQVHICRSHSPDGYSYPPRQIVSLDDEA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggggtggctggtgtgcgtgctgttggtgttcctggcttgctgtgttgtccaaacaaac
acagagacagtatgcgggatcgggcagttcctgtgtgggaacgggaagtgcattacactg
agatgggtgtgtgacgacacagatgattgtggagatggaactgacgagctccccggaacc
tgctcggccagaacatgcggaaccacagagttcagctgtggtggacatctgaaccagtgt
gttcccagtacctggctctgtgacggcaaagcagactgtgagaatggagctgatgaggag
agctgtgcgcccaagcactgcacagataacaaattccactgcagtaacggccagtgtgtg
tcagcctcctttgtgtgtgatgaggagttggactgtgatgacgggagcgacgaggcttcc
tgcccacccaccacctgtagctccacctccttccagtgccacaactctgtatgtgtgccg
cgcctgtgggcctgcgacggagacgttgactgctcagatagctccgacgagtggccccag
aactgtgggacacgagcccctgagggtgcccccaagccctgctcccttcgggagttccaa
tgtggcagcggggagtgtatccacagcagctggaaatgtgatggaggattcgactgcctg
gatcgctctgacgagaccaactgtagccgcctcacctgccgccccgatgagttccaatgc
ggtgatggcacctgtatccacggcggtcgccaatgtaaccgccagtacgactgcagagac
ttgagtgatgaaatgggctgtgtcaatgtgagccattgcaagggtcccaccaggtttaag
tgccgtagtggggagtgcatcagtatggagaaggtgtgtgacaagcagcgtgactgcagg
gactggtcagatgagcctctcagagagtgtgattccaacgagtgcctgtacaacaatggc
ggctgctcacacttctgcaatgacctgaagttcggctatgagtgccaatgtcccaccggc
tactacctgacggacaagaaacgctgtgaagatatcgatgagtgtgccaacccagacatc
tgcagtcagatctgtgtcaatcatatgggcagctacaagtgcgagtgtgaggagggctac
caggtcgacccagcgaccaaagcctgcaaggccatcggcactgtagcctatctgttcttc
accaatcgccatgaggtgaggaagatgacactggacaagagtgagtacacgcgtgtcatc
ccccacctgaagaatgcagtggctctggacatggacatggttgccaaggagatttactgg
tctgacctctcccagaagaagatctacagcacctcaatggacttggctgcagacacagcg
cagcacaaagttgtgattgacagcgacatcgaagctccggagggcatcgcctttgactgg
gtccacggcaacatctactggaccgacagtatccgcagcagcatctctgtgtcaaccgcc
aacgggagccgccgcaagactctcttccagaatgacctggccaagccccgcgctattgtg
gtcgacccccacagcaatttcatgtactggactgactggggaactccagccaagattgag
aagggaggtctgaacggaggagaccgtgctgctctggtcacagacaacattgtgtggccc
aatggaatcacccttgacctgctgaaccagcggctgtactgggtggactccaagctgcac
accctctccagtatcgacgtccagggtggcggccgaaggacactcattatagatgaacac
aggctagcccatcccctaggcgtcactgtgtttgaggaaagagtgttttggacagatgtc
agcaacaatgccattctgagtgccaaccgtgtgacaggcagggacatcaagcctgtggca
gagcacctggtatccccagaggacattgtgttgtaccacaacctcaaacagccaactggc
agggactggtgcaaggtggccaatggaggctgtgagttcatgtgtctggcagccccccag
gtgggcctacattcccccaagtacacctgtgcatgccctgacaacatgctgctggccaaa
gacatgaggaaatgtgtaccagctgcaccaacacctgcaactccagtcaagcccattgtt
cccacctccaaccccccaccggcacccgcccacacctcccctgcacctccagcccgcgcc
accaataaggcccccatcatcgctaccacagttatgcctgcgcctccccgcactaccaag
cctgtgccacgcaacacccagcctgcccagccagatacacccaggatccctcaggcccag
actaccacagtgcctcaagtcaccactcaggacatccgccatgaatttgctgctataccc
acagccccttcaacccctgcagctttatacatcgcgctgcctatagccattgtgtgtctg
gtggcatttgttgccgtgctgctgtggaggaactacaggctgaagaacaccaacaccatt
cactttgaaaacccagtctaccagaagaccactgaagaccaggtgcacatatgcaggagc
cacagtccagacggctactcctacccaccgagacagattgtgagtcttgatgatgaggct
tga
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