Oncorhynchus tshawytscha (Chinook salmon): 112247489
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Entry
112247489 CDS
T05605
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1-like
KO
K20894
shank-associated RH domain-interacting protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04217
Necroptosis
otw04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
112247489
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
112247489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112247489
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LUBAC complex
112247489
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GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
ubiquitin
Motif
Other DBs
NCBI-GeneID:
112247489
NCBI-ProteinID:
XP_042185519
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Position
LG10:62533701..62549355
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AA seq
419 aa
AA seq
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MVGPDCNTVLMSVRVSVCHSGIQPLCLPGAGDEVLHLQLSMDPSKAGEFRLALRDSSGSG
RSVFIAEFDLRSVQYEVKSPRLHENHLATPPHDCIRFNFCCDLEAEQWATVVMSSLREAH
RVAANSSPHPLDDRQMHTTAVALEQCSTASLPLTEELRLELARAIEAGDSQAAAQHASAL
AHQKVALTIQLSEKSYAEGEIRLAVAVEDISSSCCVTVKVFPHMTVAALKQQVFLEYGFH
PRVQRWVIGQCLCTEPRSLASYGVQRDGDMAYLYLISARHAHLTRQLFQQDALLTPPLPT
SNGSTSQDWRGYSTLPSRLSHNSQDYADRLGMSEIREALNLETLQNNKPDQPCKASKTQT
EWVYPSCTFINNPSRPGCEICSTARPDSGAPPHTTGERNKSGAGGDWCIDQLTASQPLP
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggtgggcccggactgcaacacggttttgatgtcggtgcgagtgtcggtttgccattct
ggaattcaaccgctttgcctccccggagctggcgatgaggttctccatcttcagcttagt
atggaccccagcaaagctggagagtttcggctagcactgagggacagtagcggaagcggc
cgtagtgtgttcattgcagagtttgacttgcgctctgtgcagtatgaggtgaagtctcca
cgccttcacgagaatcatttggcaacgccccctcacgactgcatccgcttcaacttctgc
tgtgatctggaggcggagcagtgggccacagtggtgatgtcatccctaagagaggcacac
agagttgctgcaaatagttccccacatcctctggatgaccgacagatgcacaccacagca
gtagctctagaacagtgcagcacagcctccttaccactcactgaggagctgcgcctggag
cttgcccgggcgatcgaagcaggcgacagccaggctgctgctcagcatgcatctgctctg
gctcaccagaaggtggcgctcaccatccaactgtctgagaagagttacgcagaaggagag
atacgtttggctgtggcagtggaggacatttcctcttcctgttgcgtcacagtgaaagtt
ttcccacacatgaccgttgcagcactcaagcagcaggtgtttctggagtatggcttccac
cctcgcgtgcagcgctgggtgatagggcagtgtttgtgcacagagcccaggtccctggcc
tcgtatggagtccagagggatggggacatggcctacctctacctgatctcagcccgccat
gcccacctcacccgccagctgttccagcaggacgccctcctcaccccacctctgcctacc
agcaacgggtctacgtcccaggactggaggggctacagcaccctgccctccaggctcagc
cacaactcccaggattatgctgacaggctgggtatgagcgagatcagagaggccctcaac
ttggagactctgcagaacaacaaacctgatcaaccctgcaaagccagtaaaacacagaca
gaatgggtttatccctcctgcacctttatcaacaatccttcccgaccaggctgtgagatc
tgcagtacagccagacctgactcgggagcaccgcctcatacaacaggagaaaggaataag
agtggagcagggggagattggtgcattgatcagttgactgcctcgcaacctttaccatag
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