KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112247600
Entry
112247600         CDS       T05605                                 
Name
(RefSeq) RING-box protein 1-like
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420  Nucleotide excision repair
otw04110  Cell cycle
otw04114  Oocyte meiosis
otw04120  Ubiquitin mediated proteolysis
otw04141  Protein processing in endoplasmic reticulum
otw04310  Wnt signaling pathway
otw04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    112247600
   04120 Ubiquitin mediated proteolysis
    112247600
  09124 Replication and repair
   03420 Nucleotide excision repair
    112247600
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    112247600
   04350 TGF-beta signaling pathway
    112247600
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    112247600
   04114 Oocyte meiosis
    112247600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:otw04121]
    112247600
   03400 DNA repair and recombination proteins [BR:otw03400]
    112247600
Enzymes [BR:otw01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     112247600
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   112247600
  Multi subunit type E3
   SCF complex
    Ring finger protein
     112247600
   Cul2 complex
     112247600
   Cul3 complex
     112247600
   Cul4 complex
     112247600
   Cul7 complex
     112247600
   Cul8 complex
     112247600
   Cul9 complex
     112247600
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      112247600
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      112247600
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4_2 zf-C3HC4 zf-RING_11 zf-RING_UBOX zf-RING-like FANCL_C DUF6811 zf-RING_5
Other DBs
NCBI-GeneID: 112247600
NCBI-ProteinID: XP_024272173
LinkDB
Position
LG21:17911319..17911713
AA seq 108 aa
MDRMAAVMVVDTPSTMNSRASKKRFEVKKWNEVTLWAWDIVVDNCAICSNHTMYLCIEYQ
VSATSEESTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
NT seq 327 nt   +upstreamnt  +downstreamnt
atggatagaatggcggcagtaatggttgttgataccccaagcaccatgaatagtagagca
agcaagaaacgttttgaagtgaagaagtggaatgaagtgacactttgggcctgggacatt
gtggtggacaactgtgccatctgtagcaatcatacaatgtatctatgcatagagtaccag
gtctctgccacgtcagaggagtccaccgtagcctggggagtctgcaatcatgcattccat
ttccactgtatctcccgttggttgaagaccaggcaggtgtgccccctagacaacagggag
tgggagtttcagaaatatggacactag

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