Oncorhynchus tshawytscha (Chinook salmon): 112247654
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Entry
112247654 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: slit homolog 1 protein-like
KO
K06838
slit 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112247654
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Axon guidance molecules
112247654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
Laminin_G_2
Laminin_G_1
EGF
hEGF
LRR_1
LRR_9
LRR_14
LRRNT
EGF_TEN
LRRCT
LRR_EndoS
EGF_Teneurin
EGF_DL_JAG
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
112247654
NCBI-ProteinID:
XP_042162192
LinkDB
All DBs
Position
LG25:complement(33277397..33497387)
Genome browser
AA seq
1536 aa
AA seq
DB search
MEIMPGRGACSGAGMGRLPGYLVCVLVLCALVSGYASTCPALCTCSGTTVDCHGLGIKTM
PRNIPRNTERMELNGNNLTRITKTDFSGLKYLRVLQLMENQIGAIERGAFDDMKELERLR
LNRNQLQHLPELLFQKNPALSRLDLSENNIQSIPRKAFRGATDIKNLQLDKNHISCIEDG
AFRALRSLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLHCDCHLSWLAEWLRQRPT
IGLFTQCTAPSPLRGLNVAEIQKHEFTCSGQSESSGLQPCSLGGGTCPAMCTCSNNIVDC
RGKGLTAIPASLPDTMAEIRLEQNGIKSVPPGAFFPYKKLRRIDLSNNQISEIAPDAFQG
LRSLNSLVLYGNKITELPKGVFDGLYALQLLLLNANKIHCVRANAFTDLQNLSLLSLYDN
KIQTVAKGTFASLRAIQTLHLAQNPFICDCNMRWLADYLRSNPIETSGARCTSPRRLANK
RIGQIKSKKFRCSAKEQYFIPGTEDTRLNNECNSDPVCPPKCRCDSNVVDCSNLRIXKIP
EHIPASTTELRLNNNEITTLEATGVFKALSQLNNINLSNNKITEIEDGAFEGAGSVNELH
LSANQLDSVRSGMFKGLEGLHMLMLRNNKIRCIHNNSFTGLHNVRLLSLYDNQLTTITPG
AFDTLQTLSTLNLLANSFNCDCRLAWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALP
DFRCEEGVEEMSCVPRPQCPSECTCLETVVRCSNNHLRALPKGIPRNVTELYLDGNQFGM
VPKELSTFKYLQLVDLSNNKINSLTISSFSNMSQLTTLILSYNSLRCIPSLAFGGLRSLR
LLSLHGNEISELPDGIFSDVASLSHLAIGANPLYCDCRLLWLSDWVKTGYKEPGIARCAG
PTGMEGKLLLTTPAKTFECHGEVDSGVLAKCNPCLSSPCVNQGICHSDQAEIYRCSCPPE
FKGRNCETSLNVCVSNPCVNGGTCQLDEEEEAAYSCACPLGFDGPTCLTNIDDCEDNDCG
NGAACIDGVNHYTCLCPLYYTGEMCEEMEDVCAPGVSPCQHQSTCLITSTGPQCVCSPGY
VGDDCSVDYDDCEENRCPNRAQCVDQLNAYSCSCPDGYSGQLCELPPSPRSLCDLADCQN
GAPCVERAGRALCQCLPGFGGPRCEKLVSVNFIDRDSYLLLSDLKNWPQANITLQVSTAE
ENGILLYNGDNDHIAVEMYQGHVKVSYDPGSQPGHAIYSTETINDGQFHTVELVTFDQMV
NLSIDGGLPTTMDSLGGVRPLNGEAPLYVGGMPVDVHSAAFRLWQIQNGSSFHGCIQNLY
INNELQDFTKTQMKPGVVPGCEPCRKIYCLHGICQPDGPQGPVCHCQPGWSGPHCDQPAD
NPCQGSKCVHGKCIPLDLQSYRCECVEGYRGALCNQQGELFNPCRSHNCKHGHCQTSDSG
DAYCHCEAGYSGEICDTESECRGEPVRDFYQVQRGYTICQTTRMVSWVECSGACDTGACC
ASQRMKRRKYTFECSDGRSFSEEVEKTIKCGCVGCM
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atggagatcatgcccgggagaggagcttgttctggggcaggcatggggaggttacctggg
tacctggtgtgtgtgctggttctctgtgccctggtgtcaggctatgccagcacatgccct
gccctgtgcacctgcagtggcaccacagttgactgccatgggctgggcatcaaaaccatg
ccccggaatataccccgcaacacagagagaatggaactgaatgggaataacctcacacgc
atcaccaagacggacttctctggactcaagtacctccgcgtgctgcagctgatggagaat
cagattggagcgatagagcgtggagcgtttgatgacatgaaggagctggagagactgcgc
ctgaatagaaaccaactgcagcaccttccagaactgctgtttcagaagaaccctgcactg
tcacgtctagatctgagtgagaacaacatccagtccatccccagaaaggctttcagagga
gctacagacatcaagaaccttcagttggataagaaccacatcagctgcatcgaggacgga
gctttcagagcactgaggagcctggaagtactgactctgaacaacaacaacatcagcagc
atcccagtctccagcttcaaccacatgcccaaactacgcaccttccgtctccactccaac
aacctgcactgtgactgtcacctgtcctggttggccgagtggttaagacaaaggcctacg
attggtctgttcacccagtgcactgctccatccccgcttagaggactcaacgtggctgag
atacagaaacatgagtttacctgctcaggtcagtcagagagctccggcttgcagccttgc
agcctagggggaggtacgtgccctgccatgtgtacctgcagtaacaacattgtggactgc
agagggaaaggcctcacagctataccagccagccttcctgacaccatggcagagattcgc
ctggagcagaatgggatcaagtcagttcctcccggtgccttctttccctacaagaagctg
cgcaggatagacctgagtaataaccagatatctgaaatagctcccgatgccttccaaggc
ctgagatctctcaactcactagtcctgtatgggaataagattacggagcttcccaaagga
gtgtttgatggactatatgccctgcaactactgttgttgaatgccaataaaatccactgt
gttcgggccaatgccttcacagacctgcagaacctctctcttctgtctctgtatgacaac
aagatacagactgtggccaagggcaccttcgcttctctcagagctatacagacgcttcac
ctggcccagaacccgtttatctgtgactgtaatatgaggtggctggcagactacctgcgc
tccaaccccatagaaaccagcggtgcccgttgtaccagccccagacgactggccaacaaa
cgcatcgggcagatcaagagcaagaagttccgctgctctgccaaggaacaatacttcatc
cctggtaccgaggacacccgtctgaataatgagtgtaacagtgatccagtctgtcctcct
aaatgtcgctgtgattccaacgtggtggactgctccaacctccgaatcnaaaagatacca
gaacacatccctgcctctaccactgaacttcgtctgaacaacaatgagatcactacactg
gaggctacaggagtattcaaggccctctcccagctcaacaacattaaccttagcaacaat
aagatcacggagatcgaggatggggcgtttgagggggcggggtctgtcaacgagctccat
ctttcagccaatcagctggattctgtccgcagtggaatgttcaagggactggagggacta
cacatgctaatgttgaggaacaacaagatcagatgtatccataacaacagcttcaccggc
ctgcacaacgttcgcctgttgtctctctatgacaaccagctaactaccatcacccctgga
gccttcgacaccctgcagacactgtctacacttaacctcctggctaactccttcaactgt
gactgtcgtctggcctggcttggtgattggctgagaagcagaaaaatcgtcacgggcaat
cctcgatgccagcgccccgccttcctcaaagagatcccactacaggacgtggcactgcct
gacttccgctgtgaagagggagtggaggagatgagctgtgtgcccaggcctcagtgtccc
agtgagtgtacatgtctggagactgtggtacgctgcagtaacaatcacctccgtgcgctg
cccaaaggcatccccagaaacgtcactgaattgtatctggatgggaaccagtttggcatg
gtgccaaaagagctttctacctttaaatacctccagttagtagaccttagtaacaacaag
atcaactctctcaccatctcttcattctccaacatgagtcagcttaccacactgatcctg
agttataactctctgcgctgcatccccagtctggcctttggtggactgcgctcccttcga
ttactgtctctccatggcaacgagatctccgagcttcctgacggcatcttcagcgatgtg
gcctctctgtctcacctggctattggtgccaatcccctgtactgtgactgccgtctgctc
tggctgtctgactgggtgaagacgggctacaaggagccaggcatcgcccgctgtgccgga
ccgacgggcatggagggcaagctgctgctcaccacccctgccaagacgtttgagtgccac
ggtgaggtggacagcggcgtcctggccaagtgtaacccatgcctgtccagcccgtgtgtc
aaccaagggatctgtcacagtgatcaggcagagatctacaggtgtagctgtcctcctgaa
ttcaagggtagaaactgtgagacttctctgaacgtgtgtgtcagtaacccctgtgtcaac
gggggcacctgccaacttgatgaggaggaggaggcagcatacagctgtgcctgtcccctt
ggctttgacggtcctacctgcctgaccaacatagatgactgtgaagataatgactgtgga
aacggagctgcctgtatagatggagtcaaccactatacctgcctctgtccactgtactac
acaggggagatgtgtgaggagatggaggatgtgtgtgctccaggggtcagtccgtgtcaa
caccaatctacctgtctcatcacctctactgggccccagtgtgtgtgttccccgggctac
gtgggtgatgactgcagtgtggactacgatgactgtgaggagaatcgctgtccgaacaga
gctcagtgtgtcgaccaactcaacgcatactcctgctcctgccctgatggctatagtggt
cagttgtgtgagctgcccccctccccgcggtctctgtgtgacctggcagactgccagaac
ggtgccccgtgtgtggagcgggcaggccgggcactgtgccagtgtctccctgggttcgga
gggcctcgctgtgagaagctggtcagcgttaacttcatagacagagactcctacctgctg
ctctctgacctcaagaactggccccaggctaacatcacactgcaggtgtcgacagcagag
gagaatggtatcctgctgtataatggagacaatgatcacatcgctgtagagatgtatcaa
ggtcacgttaaggtcagctacgaccctggcagccagcctggacatgctatctacagtact
gagacaatcaacgatggtcagttccacacggtggagctggtgacctttgaccagatggtg
aacctgtccatcgacgggggtctccccaccaccatggatagcctggggggggtccgtccc
cttaacggggaggctccgctatacgtggggggtatgcccgtggacgtccactcggcagcc
ttccggctctggcagatccagaatggctccagtttccacggctgcatccagaacctgtat
atcaacaatgagctgcaggacttcactaagacccagatgaagccgggcgtggtgccaggc
tgtgagccatgtaggaagatctactgcctgcatggtatctgccagccagacgggccacag
ggaccagtctgccactgccagccaggctggagcggaccacactgtgaccagcctgccgac
aacccatgccagggcagcaagtgtgtgcatgggaagtgtattcccctggacctgcagtcc
taccgctgtgagtgtgtggagggttaccgtggtgccctgtgtaaccagcagggggagctg
tttaacccctgccgcagccacaactgtaaacatggacactgtcagacgtctgattcagga
gacgcctactgtcactgtgaggctggatacagcggagaaatctgtgacacagagtcagag
tgtcgaggggagcctgtgagggacttctaccaggtgcagcgtggatacaccatctgccag
accacacgcatggtctcctgggtagagtgctccggcgcctgcgacacgggtgcctgctgt
gccagccagcgaatgaaacgtcgcaaatacacctttgagtgcagcgacggaagatcattc
agcgaggaagtggagaagaccatcaagtgtggctgcgtgggctgtatgtag
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integrated database retrieval system
