Oncorhynchus tshawytscha (Chinook salmon): 112247822
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Entry
112247822 CDS
T05605
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04120
Ubiquitin mediated proteolysis
otw04140
Autophagy - animal
otw04144
Endocytosis
otw04620
Toll-like receptor signaling pathway
otw04621
NOD-like receptor signaling pathway
otw04622
RIG-I-like receptor signaling pathway
otw05132
Salmonella infection
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112247822 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112247822 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112247822 (traf6)
04140 Autophagy - animal
112247822 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
112247822 (traf6)
04621 NOD-like receptor signaling pathway
112247822 (traf6)
04622 RIG-I-like receptor signaling pathway
112247822 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112247822 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
112247822 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112247822 (traf6)
04121 Ubiquitin system [BR:
otw04121
]
112247822 (traf6)
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112247822 (traf6)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
112247822 (traf6)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
112247822 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
U-box
TRAF3_RING
DM
zf-TRAF_2
RING_XB3-XBAT31
zf-RING_11
zf-rbx1
Phage_GP20
Motif
Other DBs
NCBI-GeneID:
112247822
NCBI-ProteinID:
XP_042173876
LinkDB
All DBs
Position
Unknown
AA seq
551 aa
AA seq
DB search
MSCFESDKSSLENDEACCGGAAASQLSNCALAMLEKESSDSALSPTESTPTSLQGGAPLQ
GYDVEFDPPLESKYECPICLMALRAAVQTPCGHRFCRSCIEKSIRDTGQRCPVDNEVLRE
DQLFPDNFAKREILSLTVRCTNVGCTDKMELRRLDGHVTKCEFATVPCPLCQDAVWKSQL
EMHQSQHCQRRPVSCPDCVESFVYEDSKIHESLCPFANVVCQYCGMELIRDQLESHYDTD
CPKAPIACTFSTFGCREMMQRNDLAQHMQEFTQMHMRCMAEYLHRHSLTGYTQPPSSEDR
GAAAAELGAHPGASSSGAPCQCCGELQTMRETTQQLEGRLVRQDHQLRELSIQAGLVAEL
RRKVTSLEENLKELEAKQCQGVYVWPLEGFSGYLRTQAAGQPVVVHSPGFYTGRPGYKLC
LRLHLQTPSAQRCSNYISLFVHTMQGEFDGQLSWPFQGTIRLAVLDQGPEGQHHVEVMET
KPDLQAFQRPTIQRNPKGFGYVTFLHLMELQQRGFVHDDTLLVRCEVTPRFDTALRREGA
AMQPRGPEASL
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgctttgagagtgataagagcagcctggagaatgatgaagcgtgttgtggtggg
gcggccgcgtcacagctgtccaactgtgcgctggccatgctggagaaagagagcagcgac
tctgcgctgagccccacggagagtacccccactagcctacagggcggcgccccactgcaa
ggctacgacgtggagttcgaccctccactggagagcaagtacgagtgccccatctgcctc
atggccctgagggcagccgtacagacgccgtgcggccatcgcttctgccgtagctgcatc
gagaagtccatccgtgatacagggcagaggtgtccagtggataacgaggtactacgggaa
gaccagctgttcccagataactttgccaagcgggagatcctctccctaacggtgcgctgc
accaacgtaggctgcactgacaaaatggagcttcgccgcctggatggccatgttacgaaa
tgtgagtttgccaccgtgccttgtccgctgtgccaggacgcggtgtggaagagccagctg
gagatgcaccaaagccaacactgccagcggagacctgtgtcctgtcccgactgtgtagag
agctttgtttacgaggacagcaagattcatgagtcgctgtgtccctttgccaacgtggtg
tgtcagtactgcggtatggagctcatcagagaccagttggaatctcactatgacacagac
tgtccgaaggctccgattgcctgtaccttcagcacttttggatgtcgagagatgatgcag
cgcaatgacctggcgcagcacatgcaggagttcactcagatgcacatgcgctgcatggct
gagtacctgcacaggcacagccttaccgggtacacccagccaccttcttctgaggaccga
ggggctgccgccgcagagctgggggcacacccaggagctagcagcagtggcgccccctgc
cagtgctgcggggaactgcagaccatgcgggagaccacccagcagctggagggacgtcta
gtgcggcaggaccaccagctacgtgagctgagcattcaggcggggctggtggcggagctc
cgtcgtaaggtcacctcgctggaggagaacctaaaggagctggaggccaagcagtgccag
ggcgtgtacgtgtggcccttggagggcttctcgggctacctacgtacccaggctgccgga
cagcctgttgtggtgcacagcccgggcttctacacgggccggccgggctacaagctgtgt
ctgcgcctccacctccaaacgccctcggcacagcgctgctccaactacatctcactgttc
gttcacaccatgcagggggaatttgatgggcagctgtcgtggcccttccaaggcaccatc
cggctggccgtactggaccaggggcctgagggccagcaccatgtggaggtgatggagacc
aagcccgacctgcaggccttccagaggcccaccatccagaggaaccccaagggctttggc
tacgtcacctttctgcacttgatggagctacagcagcgggggtttgtgcacgacgacacg
ctgctggtgcgctgcgaggtgacgccgcgcttcgacaccgccctgaggcgcgagggggcg
gccatgcagcccagagggcccgaggcctcgctgtga
DBGET
integrated database retrieval system
