Oncorhynchus tshawytscha (Chinook salmon): 112248987
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Entry
112248987 CDS
T05605
Name
(RefSeq) oxysterols receptor LXR-alpha isoform X1
KO
K08536
liver X receptor alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03320
PPAR signaling pathway
otw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112248987
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
112248987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112248987
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112248987
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112248987
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
112248987
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Ortholog
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
112248987
NCBI-ProteinID:
XP_024274255
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Position
LG04:53315860..53340924
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AA seq
467 aa
AA seq
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MSTLSATDITDVGHGEVFDGDPELQLDCLCSGDDRSSAEMKHEGNLLPLEPPDHAGFSSS
PQKRPSSLAEESSPLPMEPSDIKADPAGSMPANTEGQPVKRKKGPAPKMLGNEVCSVCGD
KASGFHYNVLSCEGCKGFFRRSVIKSAQYSCKNNGRCEMDMYMRRKCQQCRLRKCREAGM
LEQCVLSEEQIRVKKMKKNEEETARTSAVVTPTPVPEVVPLAPEQLEMIEKLVAMQKQCN
KRSFIDRPKVTPWPQSQDPQNREVRQQRFAHFTELAIMSVQEIVDFAKQLPGFLELTRED
QIALLKTSTIEIMLLETSRRYNPAIESITFLKDFSYNKEDFAKAGLQLEFINPIFEFSKG
MNDLHLDEAEYALLIAINIFSAGQRSSDRPNVQDHELVERLQQPYVDALRSYIMIKRPND
HLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtccacactgtctgcgactgatatcacagatgttggtcatggtgaggtgtttgacggg
gacccagagctgcagctggactgcctctgcagtggtgacgaccgcagcagtgcagaaatg
aagcatgagggcaacctcctccccctggaaccacctgaccatgcagggttttccagctcc
ccccagaaaaggccttcctcactagctgaggagagcagcccattgcccatggagcccagt
gacatcaaggccgaccccgccggcagcatgcctgccaacacagagggccagccggtgaag
aggaagaagggtccagcccccaagatgctgggaaacgaggtgtgcagcgtgtgcggggac
aaggcctcaggcttccactacaatgtgctgagctgcgagggctgcaagggcttcttccgc
cgcagcgtcatcaagagtgcccaatattcgtgcaagaacaacggccgctgtgagatggac
atgtacatgcgccgcaagtgccagcagtgccggctgcgcaagtgccgtgaagcgggcatg
ctggagcaatgcgttctctcagaggagcagatccgagtgaaaaagatgaagaagaacgag
gaagagactgcacgcacgtctgccgtggtgacccccaccccagtgccagaggtggtcccg
ctggcgcccgagcagttggagatgatcgagaagctggtggccatgcagaagcagtgcaac
aagcgctcgttcatcgaccggcccaaagtcacgccgtggccccagagtcaggaccctcag
aacagggaggtgcggcagcagcgctttgcccacttcactgagctggccatcatgtcggtc
caggagatagtggactttgccaagcagttgcctggcttcctagagctcaccagagaggac
cagattgccctgctgaagacctcaaccattgagatcatgctgctggagacatcgcggaga
tacaaccctgccattgagagcatcacgttcctgaaggacttcagttataacaaggaggat
tttgccaaagcagggctgcagttggagtttatcaaccccatatttgagttttccaagggc
atgaacgacctgcacctggacgaggcggagtatgctttgctcatcgccattaacatcttc
tctgcaggtcagaggtcaagtgaccggcccaatgtgcaggaccatgaactggtggagcga
ctgcagcagccgtatgtggacgcacttcgttcttacatcatgataaagagaccaaacgat
cacctgatgtttccacgcatgctcatgaagctggtcagcctccgcaccctcagcagcgtc
cattctgagcaggtcttcgccctgcgcctccaggacaagaagctcccgccgctgctgtct
gaaatctgggacgtccacgagtga
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