Oncorhynchus tshawytscha (Chinook salmon): 112249819
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Entry
112249819 CDS
T05605
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04115
p53 signaling pathway
otw04145
Phagosome
otw04148
Efferocytosis
otw04350
TGF-beta signaling pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
112249819 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112249819 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112249819 (thbs1b)
04148 Efferocytosis
112249819 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
112249819 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
112249819 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112249819 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112249819 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112249819 (thbs1b)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112249819 (thbs1b)
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112249819 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_ADAMTS
Laminin_G_3
EGF
cEGF
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
112249819
NCBI-ProteinID:
XP_042177363
LinkDB
All DBs
Position
LG05:complement(9017721..9040302)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKLTGIFLLLMLWTCESVRVAESRDDNSVYDLFELVHVSKKNHGVTLVKGDDPYSPAYKI
LNPDLIPEVPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS
NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA
PIQSILTQETPITARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQNSVLTDRI
IVMDNPINGSSPAIRTDYTGHKSKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK
VTDENKLLMNRAGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA
NATVSDGECCPRCGTLSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV
QTRDCYLQECDKRFKQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCQGEG
RQTEKCTKSPCPINGNWGPWSLWDTCSSTCGGGAQTRKRLCNDPAPKYGGKECQGDSKAS
QLCNRNACPIDGCLSNPCFPGTKCTSVPDGTWSCGKCPTGYSGDGIKCEDIDECKEVPDA
CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATAKKQVCTPRNPCLDGSHDCN
KNARCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC
PNLPNSGQEDYDKDGVGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCP
YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPL
EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDEKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVPDIYDVCPENFDISETDFR
KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWNNKPTKAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKRIMKDSGSV
YDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacaggaatatttctgctgttgatgctttggacctgcgagagcgtacgagtt
gcagagagccgagacgacaatagcgtgtacgacctgttcgagctggtccacgtctccaag
aagaaccacggagtgaccctagtgaagggcgacgacccatacagtcccgcctacaagatc
ctcaacccggacctgatccccgaggtccccgagagctccttcagggacctcattgattcc
atccacgcggagaggggattccttctcctcctcaacttcaagcagttcaagcggaccagg
ggctccctcctgacggtggaaaagcgtgacggatccggagccgtgttcgagatcgtctcc
aacgggaaagcgaacaccctggatgtggttttctctacagtgaataagcaacaggtggtg
tcgatagaagatgtggacttggcaacgggccactggaagaatattacgctgttcgtgcag
gaggaccgggcgcagctgtatgttggctgtgaggaggtgaacacagcggaactggacgct
cccatccagagcatcctcactcaggagactcccatcacggcgcgtctcagaatcgggaaa
ggagcggtgaaggaccggttcatgggggtgctccaaaacgttcgctttgtctttggaacc
actttagaagcgatactgcgcaacaaaggatgccaaaactctgttctgactgatagaatc
atcgttatggacaaccccatcaatgggtccagccctgccattaggactgactacactggc
cacaaaagtaaagacctgcagatgatctgtgggttctcctgtgaggacctggctggcatg
ttcaaggaactgaaggggctgggagtggtggtgaaggagctgtctaacgagctacgcaaa
gtgacggatgagaacaagctgttgatgaacagagcagggatccacagtggagtctgtctg
cacaacggcatcgtccacaagaacaaggccgagtggaccgtcgacgactgcaccgagtgc
acttgtcagaactctgccaccgtatgccgcaagatctcctgcccactgatcccctgtgcc
aacgccaccgtgtctgatggagagtgttgcccgcgctgtggaacactgagtgactatgcg
gaggacggctggtccctgtggtctgaatggacacactgttccgtgtcttgtgggcggggc
attcagcagaggggccgttcctgcgaccgcatcaataacaactgcgagggaacctccgtc
caaactagggactgctaccttcaggagtgtgacaaacgcttcaagcaggacggcgcctgg
agccactggtccccctggtcttcctgctcggtcacctgtggggcgggtgtcatcacccgt
attcgcctctgcaactcccccacaccccagctgggaggcaaggactgccaaggagaggga
agacagactgagaagtgcaccaagtcaccctgccccatcaacggtaactggggaccctgg
tcgctatgggatacctgctcttccacctgtgggggaggagcccagacacgtaaacgtctc
tgcaacgaccccgcccccaaatatggtggtaaggagtgccagggtgactccaaggccagt
cagctgtgcaacaggaacgcctgccccatcgatggttgtctgtctaacccctgctttcct
gggaccaagtgcaccagcgttcccgatggaacatggagttgtgggaaatgtcccactggt
tactctggtgacggcatcaagtgtgaggacattgacgagtgtaaagaggttcctgatgct
tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccccggttacaactgtctg
ccctgtcccgcacgctactctggacctcagcccttcggcaggggagtggaggaggccacc
gccaagaaacaggtgtgtacaccacgtaacccctgcttggatgggagccacgactgcaac
aagaacgcacgctgtaactacctgggacactttgccgaccccatgtaccgctgtgagtgt
aagcctggctatgctggaaacggacacatctgtggtgaggacacggacctggacggatgg
cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaagaaggacaactgc
cccaaccttcccaactcaggccaagaagactacgacaaggatggtgttggtgacgcgtgt
gacaacgatgatgacaacgatggcattcctgacgacagggataactgcccgttcgtgtac
aaccccaggcaatatgactatgacagagatgatgttggagatcgttgtgataactgtcct
tacaacagcaaccctgaccagaccgacacagacaacaatggggaaggagacgcctgctct
gtggacattgatggagatggtattctgaatgagaaagacaactgcccgtacgtctacaac
gtggaccagcgagacactgacctggatggtgtgggagacatgtgtgacaactgtcctctg
gaacacaaccctgaccaggttgactctgatgacgaccgtgtgggagacaagtgtgacagc
aaccaggacatcgatgaggacggccaccagaataacctggacaactgcccctacatcccc
aacgctaaccaggccgaccatgacaaagacggcaagggagacgcctgcgaccacgatgat
gacaacgacgggatccctgatgagaaagacaactgcagactggccttcaaccctgaccag
ctcgactctgatggtgacggtcgcggagatgtttgcaaagatgattttgaccaagacaac
gtccctgacatctacgacgtgtgtccggagaactttgacatcagcgaaacggacttcagg
aagttccagatggttcccctggaccccaagggaacatcccagatcgaccccaactgggtg
gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt
ggttttgatgagttcaactctgtggacttcagtggtaccttcttcatcaacacagagcga
gatgatgactatgccggctttgtgttcggctaccagtccagctccaggttctacgtggtg
atgtggaagcagatcacacagacctactggaacaacaaacccaccaaggctcagggatac
tcaggactgtccatcaaggtggtcaactctactactggacctggagagcacctcaggaac
gctctctggcacacgggcaacaccccaggacaggtgaggactctgtggcacgaccctaag
aatgttggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca
ggacacatcagagtggtcatgtacgaggggaagaggatcatgaaggattccgggagcgta
tacgacaagacgtacgcaggcggaagactaggtctctttgtcttctcgcaagagatggta
tacttctcagacctcaagtatgaatgcagagatgcataa
DBGET
integrated database retrieval system
