Oncorhynchus tshawytscha (Chinook salmon): 112251611
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Entry
112251611 CDS
T05605
Symbol
ptprfa
Name
(RefSeq) protein tyrosine phosphatase receptor type Fa isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
otw04520
Adherens junction
otw04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112251611 (ptprfa)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
112251611 (ptprfa)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
112251611 (ptprfa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112251611 (ptprfa)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112251611 (ptprfa)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
112251611 (ptprfa)
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
112251611 (ptprfa)
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
Type II RPTP family
112251611 (ptprfa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
fn3_2
ig
Interfer-bind
Tc-R-P
PTP-SAK
V-set
DSPc
Y_phosphatase3
C2-set_2
PTPlike_phytase
Fn3_PTPRU
PTP-NADK
SusE
Fn3_ELFN
DUF3465
Motif
Other DBs
NCBI-GeneID:
112251611
NCBI-ProteinID:
XP_042178226
LinkDB
All DBs
Position
LG05:69323386..69708111
Genome browser
AA seq
1922 aa
AA seq
DB search
MALSHRWAQSPLARGATFILVLGSLALPSPSHADSMPNFIKSPDDQTGISGGVASFVCQA
VGDPKPRITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEAIYECTATNSVGEI
NTSAKLTVLEEDQIPHGFPTIDMGPQLKVVEKTRTATMLCAASGNPDPEISWFKDFLPVD
INSSNGRIKQLRSGALQIENSEESDQGKYECVAVNSAGTRYSAPANLYVRVRRVPPRFSI
PPTNHEVMPGGSVNLTCVAVGAPMPYVKWMMGVEELTKEEEMPIGRNVLEVTNILQSANY
SCVAISSLGMIETTAQITVKALPKPPTSLIVTETTATSVTLTWDSGNPEPVSYYVIQYRA
KVSDNSFQEVDGVATTRYSIGGLSPYSEYEFRVMALNNIGRGPPSSLVDTRTSEQAPSSP
PLAVQARMLSASTMLVQWEPPEEPNGQIRGYRVYYSSDLRAPLSGWQKHNTDDSRLTTIS
GLTTDITYSLRVLGFTSVGDGPPSDVLQVKTQQGVPAQPSSFNAEAELDTRIMLSWLWPV
QDQITKYELMYWEANSGNKLHVTFLPAGSYAVEGLKPDTLYMFSLAARSEMGLGVYTQPI
EARTAQSTPSAPPQEVHLLSLSSTSIKVSWVAPPAASRHGDIVRYSLAYQAATGEDLERH
KVSGIRADVSSYILEGLEKWTEYQVWVRAHTDVGPGPESPAVRIRTKEDVPGAPPRKVEA
DVLNSTALRVTWKPPLQVKQHGQIRGYQVVYSRLENGEPRGQPSIMDVSLPEAQWNVEDT
MDYEAVITGLLPETTYSVTVAAYTTKGDGARSKAKVVTTTGAVPGRPTMMISTTIGNTAL
IQWQPPKEMVGEHVGYQLQYKRMEEESFTVKDLKKTDDHFTVTGLHKGATYVFKLCAKNR
AGTGEEYVKEITTPDDVPSSYPQNLSVVGLTTTTTKLAWEPPALAERNGRIVQYVVVYRD
INSQQNHTNSTIETQMTIMGLQPDTTYDIRVRAFTSKGAGPNSPSIQSRTMSTSMPEFTK
NFGVKTVMKTSVLLTWEVPETYKSQVPFKILYNQQSVEVQGNLKRKLITRLQPDTDYSFV
LMSRGNSAGGLQQQVSIRTAPDLLKTKPIQYQHHPEEGGKLTITLPRVPTTAPIRWYYIV
VVPVTPATLRRWENPEDMDLDELLEASSDQSLRRRRQTQEFLRPYIAAKMDNLPDTFTLG
DEKKYHGFYNKPLPGQQQYLCFVLAALKDHESQKTFAASPYSDPITVKLHSGMPLHAEDP
EMLWVMGPVLAVVLIIIIVIAILLFKSKKERKRASPSAKDEHSAGVKDSLLAHSSDPVEM
RRLNYQTQGSSDPSCPNTPRMREHPLISTTDLANHIERLKANDGLRFSQEYESVDPGQQF
TWEHSNLEVNKPKNRYANVIAYDHSRVILASVDGVPGSDYINANYIDSYRKQNACIATQG
PLPETLSDFWRMVWEQRTNTIVMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTMLDTVEL
ATYSVRTFALYKNGSSEKREVRQFQFMAWPDHGVPEYPTPTLAFLRRVKSCNPTDAGPMV
VHCSAGVGRTGCFIVIEAMLERMKHEKSVDIYGHVTCMRAQRNYMVQTEDQYVFIHEALL
EAATCGNTEVPARNLYAHIQKLTQVTPGDTVTAMELEFKKLANSKAHTSRFISANLPCNK
FKNRLVNIMPFESTRVSLQPIRGVEGSDYINASFIDGYRQQKAYMATQGPLAETTEDFWR
MLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVT
DARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPISAHCSAGVGR
TGVFITLSIVLERMRYEGVVDLFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHY
AT
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atggcactgagccaccgatgggcacaatctcccctcgcgaggggggccacatttatccta
gtactgggcagtctggccctgccatcaccatcccacgcagacagcatgcccaatttcatc
aaatctccagatgaccagacaggtatttcgggaggagtggcatccttcgtttgccaggct
gtgggtgatcccaagccacgcatcacctggatgaagaagggcaagaaagtcagttctcag
cgctttgaggtgatagagtttgatgacggttcagggtccgtcctgcgtatccagcccctg
cggacccacagggacgaggccatctatgagtgtactgccaccaacagtgtgggagagatc
aacaccagcgccaaactcaccgtcctggaagaggaccagatccctcatgggttccccacc
atagacatgggtccccagctgaaggtggtggagaagaccaggacagccaccatgctgtgt
gctgccagtggcaaccctgacccagagatctcctggttcaaagacttcctccctgtagat
atcaacagcagcaacgggcgaatcaaacagctccgctcaggagctctccagatagagaac
agtgaagagtccgaccagggcaagtacgagtgtgtggcggtcaacagcgccgggacccgc
tactcggctccggctaatctctacgtgagagtgcgccgcgtgccaccccggttctccatc
ccgcccaccaaccatgaggtgatgccgggtggtagcgtgaacctgacgtgtgtggcagtg
ggagcgcccatgccctacgtcaagtggatgatgggagtagaggagctgaccaaggaggaa
gagatgcccattgggaggaacgtgttggaggtcaccaacatcctccagtctgccaactac
agctgtgtggcgatatcgtcactcggcatgatcgagaccaccgcgcagatcactgtcaaa
gccttgcccaagccccccacctccctgatcgtgacggagaccacagccaccagcgtcacc
ctgacctgggactccgggaaccctgagcccgtgtcctactacgtcatccagtaccgggcc
aaggtctctgacaacagcttccaggaggtggatggggtagccaccacacgctacagcatt
ggtggcctcagcccctactccgagtacgagttccgcgtcatggcgttgaacaacatcggg
cgtggccctcctagcagcctcgtggacaccaggaccagtgagcaggctccatcctctcca
ccgctagctgtacaggctcgcatgctcagcgcctccaccatgctggtccaatgggagccg
cctgaggagcctaatggacagatcagagggtaccgggtgtactacagctcggacctcaga
gccccactgagtggctggcaaaaacacaacactgatgacagcagactgaccaccatctca
gggctgaccactgatatcacctacagcctcagggtgctggggttcacctctgtaggggac
ggacctccctctgatgtactgcaggtcaagactcagcagggagtaccagcccagccatct
agtttcaacgccgaggcagagttggacacccgcatcatgctgtcgtggctgtggcctgtc
caggaccagatcaccaagtatgagctgatgtattgggaggctaactctggcaacaagctc
catgtgaccttccttccagcggggtcttatgctgtggagggtctgaagccagacaccctc
tacatgttctccctggctgctcgttccgaaatgggcctgggcgtctacacccaacccatc
gaggccaggactgcccagtccaccccctcagccccgccccaggaggtgcaccttctgagc
ctcagctccaccagcatcaaggtgagttgggtggcaccccctgcagccagccgccatggg
gacatcgtccgctactctctggcctaccaggccgccaccggtgaggacctggagcgccac
aaggtgtcgggcatcagggcagatgtttctagttatatcctggagggcctggagaagtgg
acagagtaccaggtgtgggtcagggctcacacggacgtaggcccaggcccagagagcccc
gcggtcaggatcaggaccaaggaggatgtgcctggagctccacccaggaaggtggaggct
gatgtcctgaactccacagccctgagggtgacgtggaagccccccctccaggtgaagcag
catggccagatcagagggtaccaggtggtctactcgcgactggagaacggagagccacga
ggccagcccagcatcatggatgtctccctacctgaggcacagtggaacgttgaggatacc
atggactatgaggctgttataacaggcctgctccctgagaccacctactctgtcaccgtg
gcagcctacaccaccaagggggacggggcacgcagtaaggccaaggtggtcaccaccact
ggagcagtcccaggcaggcccactatgatgatcagtaccaccattggtaacacagccctc
atccagtggcaaccaccgaaggagatggtgggagagcatgttggctaccagcttcagtac
aaacgtatggaggaggagtcgttcactgtaaaggacttgaagaagacagacgaccacttc
actgtcaccggcctgcacaagggcgccacgtacgtcttcaagctctgcgccaagaaccgg
gcgggcaccggcgaggagtacgtgaaggagattacgacgccggacgatgtgcccagcagt
tacccccagaacctgagtgtcgtaggcctgaccacgactactaccaagctggcctgggag
cctccggcgctggctgagaggaacgggaggatcgtccagtacgtggtggtgtacagagat
atcaacagccaacagaaccacaccaatagcacgatagagacccagatgaccatcatgggg
ctgcagcctgataccacctatgacatcagggtcagggctttcaccagcaagggagccgga
ccaaacagtcctagtattcagagtaggaccatgtctacctccatgcctgagttcaccaaa
aactttggtgtgaaaactgtgatgaagacctctgtcctgctgacttgggaagtgccagaa
acctacaagtctcaagtgcctttcaagatcctgtataaccagcagagtgtggaggtgcag
gggaacctgaagaggaagctgatcacgaggctgcagccagacacagactacagctttgtg
ttgatgtctagagggaacagtgctgggggtctacagcagcaggtctccatcaggaccgcc
ccggacctgctcaagaccaaacccatccaataccaacaccacccagaggaggggggcaag
ctcaccatcaccctacccagagtccccaccaccgcccctatcagatggtactacatagtg
gtggttcctgtcacaccagccacactacgtaggtgggagaaccctgaagatatggacctg
gatgagctcctggaggctagttctgaccagagcctgagaaggaggagacagacccaagag
ttcctcagaccctacatcgctgccaagatggacaatctgccagacaccttcactctagga
gacgagaagaagtaccacggcttctacaacaagcctctaccgggacagcagcagtacctc
tgtttcgtcctggctgccctcaaagaccacgagtctcagaagacgtttgcggccagcccg
tactcagaccccatcacagtgaagctccacagcggtatgcccctccatgctgaggaccca
gagatgctgtgggtcatgggccctgtcctggctgttgtactcatcatcatcatcgtcatc
gccatcctgctcttcaagagcaaaaaagaaaggaaacgagcatctccctcggctaaggat
gagcactctgctggggtgaaggactctctgctggcccactcctctgatcctgtggaaatg
agacgactcaactatcagacacaaggttccagtgaccccagttgcccgaacactccaagg
atgagggagcaccctctcatctccaccactgatcttgctaaccacatcgagcgtctcaag
gccaacgacggactccgcttctcacaggagtatgagtctgtagaccctggtcagcagttc
acatgggaacactctaacctggaggtgaacaagccaaagaaccgctatgcaaacgtcatc
gcctacgaccactccagggtcatcctcgcctctgtcgacggagtaccaggtagtgactac
atcaacgctaactacatagacagctacaggaagcagaacgcctgcatcgctacacagggc
ccgcttcctgaaaccctgagtgacttctggaggatggtgtgggagcagaggaccaacact
atcgtcatgatgaccagactggaggagaagtcacgggtgaagtgtgaccagtactggccc
agtcggggtacagagacttatgggatgatccaggtgaccatgttggacactgtggagctg
gctacctacagcgtacgcaccttcgccctctataagaatggctccagtgagaagagagag
gttcgtcagttccagttcatggcctggccggaccatggagtgcctgagtaccccaccccc
accctggccttcctccgcagggtcaagtcctgcaaccccacagatgcaggacccatggtg
gtgcactgcagtgctggtgtaggtcggaccggttgcttcatcgtgattgaggccatgctg
gagcgtatgaagcatgagaagtcagtggatatctacggtcatgtgacgtgtatgagagct
cagcggaactacatggtgcagacggaggaccagtatgtctttatccacgaggccctgcta
gaggcagccacctgcggtaacacagaggtccctgcacgcaacctgtacgcacacatccag
aaactcacccaggtcacacccggagacacggtcactgccatggagctagagtttaagaaa
ctggccaactccaaagcacatacctcaagattcatcagtgccaacctgccctgtaacaaa
ttcaagaaccggctggtgaacatcatgccttttgagtccacccgcgtgagtctgcagcct
atcagaggagtggagggctccgactacatcaatgccagcttcatcgacggatacaggcag
cagaaggcctacatggccacccaggggccgctagcagagaccacagaggacttctggagg
atgctgtgggaacacaactctaccatcgtagtcatgcttactaaactcagagagatggga
agagaaaagtgtcatcagtactggccagctgagcgttctgccaggtaccagtactttgta
gtggaccccatggctgagtacaacatgccccagtacatcctcagagagttcaaggtcaca
gacgccagggatggccagtctaggaccattcggcagttccagttcactgattggccagaa
caaggggtgccaaaaactggagagggcttcattgacttcattggtcaagtgcataaaacc
aaggagcagtttggccaggatggaccaatctctgcgcactgcagtgctggtgttgggcgc
actggtgtgttcatcaccctgagtatcgtgctggagaggatgaggtacgagggggtggtg
gatctcttccagactgtcaagacactgaggacccagagacctgccatggtgcagacagag
gaccagtaccagttgtgctacagggcagctctagagtaccttggaagctttgaccactat
gcaacataa
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integrated database retrieval system
