Oncorhynchus tshawytscha (Chinook salmon): 112252057
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Entry
112252057 CDS
T05605
Name
(RefSeq) FYVE and coiled-coil domain-containing protein 1-like
KO
K21954
FYVE and coiled-coil domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112252057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112252057
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
112252057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FYVE
RUN
GOLD_2
CC2-LZ
Motif
Other DBs
NCBI-GeneID:
112252057
NCBI-ProteinID:
XP_024278733
LinkDB
All DBs
Position
LG06:complement(12964745..13004287)
Genome browser
AA seq
1516 aa
AA seq
DB search
MAGGVGESQLQRIIRDLHDAVTELTKEYRENGEPITDDSPNLQKFSYKLEYLLQFDQKEK
TTFLGTRKDYWDYFSDCLAKIKGANDGIRFVKSIPELKTSLGKGRAFIRYSLVHQRLADT
LQQCLMNQRVTSDWYYARSPLLKSHLSVDIVSHLYELNEIQFDVASRGHDLDSSWPTFAR
RTLGMPNSPGHMWKPPSRSSSINSLASTYSQHAHEFPGSPEYGPGMLSELNESLPSGVEV
SMLDELRLELDQSELKQRELQDRVRLMGEEGAELKGVVVELQRQLDVSLTAQEEQQGMQG
TLKALERREEALSRELETLRAGERAREAEQRHLQEKLVAAEGKNVELMAKLDGVLDEKGQ
QVTSYFDSAQKIHELLDRLKEAEGGKIEALAEGEDRRQQAEKLANELRVKEVAAKEDEAK
LEALSKSAAEEKSKFAECAEEQCNAIDKLQGALTLREKEASNLQRQLHDLQSALEEREIQ
AEEARDRAQEEKEEIQGSMGNLKEALEVELLYLKKQLKTREAELLSSTQKLQHLEVQSHS
LTTERDGLSANLSELESSVREQANRIEEYKTQCTNLMELNGKLLGTVKRNEELKKELAES
RVALEGEVAALRASDKQLRSQLDDAKVTVDEKDRRLREENRALDESLQRAAMAAEVSDAA
GKRLERENLGLREEQATVRAALSSMQDELKAIHGQIGELEKSLGRSRRSEASLQEQLKDR
QARLENKEKGCVELQARVEALEARGRALEKAKTDAEKACAKKTKLIERVTTEKQTVERTQ
LVRSSAQAKESQEIAAKMTMVEGQLEVNMKEVTRLQAEVLDLRVQLNTSAEDRMRSQAQL
EVTEAQRDEHRTLTEQLKAQTEALNQRHVAELLQCNEREEALSRERDRVEAATRAELAAA
EASARGELATLKTQNERLAMENAETRESLHRANTEMAELGMTICRLTAEREEAKEGWAGE
AGRIGELEERTSREVERQEACMAALRQENASLREELRMMENLPAAMLELQEKLEKAEGQV
RSLKDSSREEMEAVKFQMSSESMNHQNQIKSVNDELGKLRVQLPKELEKVSGLEAKVSEL
EGVNEEYSRLIGEKDAHITKSEAAICQSEGEIQHLRDSVTSAEEALSTVQAVCEELKQKL
EQAEVDKRSYYLRTTAEIDDLYRTKSTLEERLIELIKDKDVLWQKSDALEFEQKLWAEER
LLQDKETTHCLGCQAHFTWWLRRHNCRLCGRVFCYYCSNNFVMTKHSGKKERCCRECYSQ
HSAVVERFTEGELSLSDTQPPPPSFGPHSPPEPAPYKPTPRVKVSDPSAKSDDAAYDIIT
QEEVNGTYDSDSLSQTTGGSLEGEQDARPLGALDIGTGAVSPDDPEENVPTVQDTEITLL
KSGEVTLVVPLSIEDISQFGDGSRELFVKSSCYSVINIAVVDCGPTVSWVFSSEPKSISF
SVVYRETTDVPVEQSKVLIPLTRCNSHKETIQGQLKVRNPGLYTLIFDNSFSRFISKKVL
YHLTIEKTIIYDGSDF
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggtgtgggggagagccagcttcagaggattatcagagatctgcatgatgct
gttactgagctcactaaagagtacagggagaatggggagccaatcacagatgatagtccc
aatctgcagaaattctcctacaaactggagtaccttctacagtttgaccagaaggagaag
acaacatttcttggcaccagaaaagactactgggattatttcagcgactgtctggccaag
atcaaaggagccaacgatggtatccgctttgtcaaatccatccctgagctgaagacttct
ctggggaaaggcagggctttcattcgttactccctggtgcaccagcgactggccgacacg
ctgcagcagtgcctgatgaaccaaagggtgaccagtgactggtactatgctcgcagcccc
ttgctgaaatcccacctcagtgttgacatcgtaagtcacctgtatgaactcaacgagatc
cagtttgacgtggcttccaggggtcatgaccttgactcgtcctggcccacctttgcaagg
aggacactgggcatgcccaactcacctggccacatgtggaaaccacccagtcgcagctcc
agcattaacagcctggccagcacatactcacagcacgctcatgagttccccggcagtcct
gagtacggcccgggcatgctgagcgagctgaacgagtcgctgccttccggcgtggaggta
agcatgttggacgagctccgcctggagctggaccagtcagagctgaagcagcgggagctc
caagacagggtgcgcctgatgggggaggagggtgctgagctcaaaggtgtggtggtggag
ctccagaggcagctggatgtgtcgctgaccgcacaggaggaacagcagggtatgcaaggg
accctgaaagccctggagaggcgtgaggaggccttgtcccgcgagctggagaccctgagg
gctggggagagggccagggaagcagaacagcgccacctccaggagaagctggtggccgca
gaggggaagaacgtagaactaatggccaagctggacggtgtgttggatgagaagggccag
caggtgaccagctattttgattcagcacagaagatccacgagctgctggacagactgaag
gaggcagagggggggaagatagaggctctggcagagggagaggataggaggcagcaggcc
gagaagctggcaaatgagctaagggtcaaggaggtggcagcaaaggaggatgaggccaag
ctggaggcgctgtcaaagtctgctgcagaggagaagtctaagttcgcagagtgtgcagag
gagcagtgtaacgccattgacaagctacagggggcattgactttgagggagaaggaggcc
agcaacctacagaggcagctgcatgacctccagagtgctctggaagaaagggagatacag
gccgaggaggccagggacagggcgcaggaagagaaagaggagatccagggaagcatgggc
aatctgaaagaagccttggaggtggaactcctctacctgaagaagcagttgaagaccaga
gaggcggagctgctctccagcacccagaagctccagcacctggaggtccagagccatagc
ctgaccacagagcgcgatggcctgagcgccaacctctcagaactggagtccagcgtcagg
gagcaagccaataggatcgaggagtacaagacccagtgcaccaacctgatggagctgaac
gggaagttgctgggcacagtgaagaggaatgaggagctgaagaaggagctggcagaaagc
cgggtagcccttgagggtgaggtggctgctctgagggcctctgacaagcagttgaggagc
cagctggacgacgccaaagtgactgtggatgagaaggacaggaggctgcgtgaggagaac
cgggccttggacgagagtctgcagagggcagccatggctgccgaggtgtcagacgccgcc
ggcaaacggctggagcgggagaacctaggcctgagggaggagcaggccacagtgagggcg
gccctgagctccatgcaggatgagctgaaggccatccatgggcagatcggagagctggag
aagagcttgggtcggtcccgcaggagtgaggccagcctgcaggagcagctcaaagaccgg
caggcccggctcgagaacaaggagaaaggctgtgtagagctccaggccagggtggaggcc
ctagaggccaggggtagggcactggagaaggctaagacagatgcagaaaaggcctgcgcc
aaaaagacaaagctgatagagagggtcaccaccgagaagcaaacggtggagagaacccag
ctagtgaggagctctgcccaggccaaggagagccaggagatagctgccaaaatgaccatg
gtagagggccagctggaggtgaacatgaaggaagtgaccaggctccaggcagaagtgttg
gatctgagggtgcagctgaacacctctgcggaggacaggatgaggagccaggcccagctg
gaggtcacggaggcccagagagacgaacacaggaccctaacggagcagcttaaagcccag
accgaggcactcaaccagaggcacgtagccgagctcctgcagtgcaatgagagggaagag
gcactgagcagggagcgtgaccgggtggaggcagccacccgggcagaattggccgccgct
gaggcctccgccagaggagagctggccacactcaagacccagaacgagaggctggccatg
gagaatgctgagacacgcgagagcctccaccgggccaatacagagatggcagagcttggg
atgaccatatgtagactgacggcagaaagggaggaggccaaggaaggctgggcgggggag
gcaggcaggataggggagctagaagagcggacgtccagggaggtggagcggcaggaggct
tgcatggccgcccttcgccaggagaacgccagcctgagagaggagctgaggatgatggag
aaccttccggcagccatgctggaactccaggagaagctggagaaggcggagggccaggtg
aggagtctcaaagactcaagtcgggaggagatggaggcggtcaagttccagatgagctcc
gagagcatgaatcatcagaaccagatcaagagtgtgaatgatgagctggggaaactgaga
gtccagctgccaaaagagctggaaaaggtgtccggtctggaggccaaagtctcagagtta
gagggggtgaatgaggagtactcacggctgattggagagaaggatgctcacatcacaaag
tccgaagcagccatttgtcagagtgagggagagattcagcacctaagagactctgtcacc
agtgctgaggaggctctctcaacggtccaggcggtgtgtgaggagctaaagcagaaactg
gagcaggccgaggtggacaaacgtagttattaccttaggacgaccgcagagatcgacgac
ctataccgaaccaagagcaccctggaggagcgcctcatcgaacttatcaaggataaggat
gttctgtggcagaaatcagacgctctggagtttgagcagaagctgtgggcagaggagcgg
ttgttgcaggacaaggagaccacccactgcctgggctgccaggcccatttcacctggtgg
ttacgccgacataactgcaggctgtgtggacgtgtcttctgctactactgtagtaacaac
tttgtgatgaccaagcacagtgggaaaaaggagcgttgctgcagggagtgttactcccag
cacagcgccgtggtggagagattcaccgagggtgagctgagcctctccgatacccagcca
cctccccccagttttggtcctcactcaccccccgaaccagccccctacaaacccactccc
agggttaaagtgtcggaccccagcgccaagtctgatgacgcggcctatgacatcatcacg
caggaggaagtgaacgggacctacgacagcgactcactgtcccaaacaacaggcggttca
ctggagggagaacaggacgcacggccactgggggcgctagacataggcacaggagcagtg
tccccagacgacccggaagagaatgtacccactgtgcaggacacagagatcacccttctc
aagtctggagaagtcacgctggttgtccctctcagcatcgaagacatctctcagtttggc
gatggctcccgagagctctttgtcaagtccagttgctacagcgtgatcaacatcgccgtg
gtcgattgtgggcctaccgtgagttgggtgttctcctcggagcccaagagcatctctttc
agcgtggtgtaccgtgagaccaccgacgtcccggtggaacagtccaaggtgctgattcct
ctgactcgctgtaactctcacaaagagaccatccaaggccagctgaaagtcaggaaccct
ggtctctacactctcatctttgacaactccttctcaaggttcatctcaaagaaagtcctc
taccacttgacaatcgagaagacgattatatacgatgggagtgatttctaa
DBGET
integrated database retrieval system
