Oncorhynchus tshawytscha (Chinook salmon): 112252476
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Entry
112252476 CDS
T05605
Name
(RefSeq) Hermansky-Pudlak syndrome 6 protein
KO
K20192
Hermansky-Pudlak syndrome 6 protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112252476
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
112252476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HPS6_C
HPS6
Motif
Other DBs
NCBI-GeneID:
112252476
NCBI-ProteinID:
XP_024279494
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Position
LG01:complement(49485494..49492020)
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AA seq
952 aa
AA seq
DB search
MMQRMLEQVTDFVDFTRGTDLNEYLRQTYSNNRSCKNNLSDVRVSPDGRHIHVILRKPKV
GLMTFDKYQRPQQIQSQKHLDLGMTRAVPIVDIVYFDDKNRDGGVALLAVIFENGKAEFW
KFLELKGGWHPLHTADLCNSPRAKVISVSASQNYIVWCEERPPSESSLLVNETHNFRYCI
CKRTYEVEEMAVSLGGMKIALHNNPRYNVISSGENVYLLPDLKDKSTMSLSKFFLMWSPR
YDTFRVSSTCKGNLLRKDSPYTKESDFRRLITDCTGYLSALSPPDIYGYSPTGSGGLLLL
LSTGWVSLLQKDGVLRQIYKLADNCLASSSAHNSLNVYQDTLALTIGRTLYLIDTTCGVE
LEKIALKREGLLYVNRTERQAPHLLLETGLYVVMLRDGDPWGHDSDPKQKTPSLGTGESI
SPAALLVEAVFEEACKYYQQRSLSSTRLTVEKLKRGGMFQAPITLANIVGDYLQSRGERG
VELPQGGGRRGQEKLLGSLEAELKGLVSLEEVKGGLVKEREVEDVCESLVQQEVGRLLLS
SELDRDSLLYLNSIFSLFPGQAWRATQSALQLRCNGEGSLSSKVPPEVWKTVLSPVQAPT
VTANLPYTNGNSQSKHKPPKPCPSTGSSFKLSPSLSSNSCPPAANSALPVFELLCHSVFC
FQPSWLPRFLELAQQQQTSAGLGMGLGLGGSTWSYSGGRGFAENGESLPLYKRALSALPL
PGPGSDLKQYPDYEQNQDLEVDLLLVSGRPNAVLQALRILMGRRQWERVTQVAQRFCRQS
PLLNKEIFTTLLCEVAQHRDLDPYLDLLWALCPEDLTVTAILNIVLKNIPSSSSLSTSFS
PSSNIPPSSPFADPQSSQLTFGLLKPLLSKVLQRETRPNQRYADILQSPSFPPPTPPRQA
KGLPRSTTEPSIGLDQQHNDIISNMAAILDQHDPSKHRTVHGGRVTSTPNPD
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaacgaatgttggaacaagtgacagatttcgtggactttactagaggtacagat
ttaaacgagtacctaagacagacgtattcgaataacagaagttgcaaaaacaatctatca
gatgtgcgcgtgagcccagatggacgccacattcacgtcattctccgcaaacccaaggtt
ggtctcatgacttttgacaaatatcagagaccgcagcagatccagagccaaaagcaccta
gatttggggatgactcgggctgtgcccattgtggatattgtatattttgacgacaaaaac
agagacggcggtgttgcgctgttagctgtcatattcgagaatggaaaagcagagttttgg
aaatttctggaactcaaagggggatggcatcccctgcacaccgcggacctttgcaacagc
ccccgggctaaagtaatctctgtctcggccagtcagaactacatcgtctggtgtgaggag
cggccaccgtcagagagttcattacttgtcaacgagacccacaatttcaggtactgcatc
tgcaaacgaacctatgaggtggaggaaatggctgtcagtttagggggcatgaaaattgct
ctgcacaacaacccccgctacaacgtcatcagctcaggtgagaatgtttacctactaccc
gatttgaaagacaaatccaccatgtccctctccaaattctttctcatgtggtccccccgg
tatgacacattcagagtgagcagcacctgtaaaggtaatctcctccgaaaagactcacct
tatacaaaagaatctgactttagaaggttgataacagactgcacgggatacctatcagcc
cttagcccccctgatatatatggctactcccccactggcagtggaggcctgttactgctg
ctcagcacaggttgggtcagtctactacagaaggatggggtgttacgacagatctacaaa
ctagctgacaactgcctagccagcagcagtgcccataacagcctgaacgtgtaccaggac
accctggctctgaccatcggacggaccctctacctgattgacactacgtgtggtgtggag
ctggagaaaatagccctgaagagagaggggctactctacgtgaacaggaccgagaggcag
gcaccacacctgctgttagaaaccggcctatatgtagtgatgctccgggacggcgacccc
tggggccacgactctgacccaaagcagaagaccccgtccctgggtacaggagagagcatc
agccctgcggctctactggtagaggctgtgttcgaggaagcctgtaagtattaccaacag
agaagtctcagcagcactcggctcactgtggagaagttaaagagaggagggatgttccag
gctcctatcactctggcaaacatcgtcggagactacctccagagcaggggggagagggga
gtggagttaccccagggaggaggcaggagaggacaggagaagctgctcgggtccctggag
gctgaactgaaggggctggtctccctagaggaggtgaaggggggattggtgaaggagagg
gaggtggaggatgtgtgtgagagtctagtgcagcaggaagtggggagactcctcttgtcg
tcagagctcgaccgagactctctactctacctcaactccatcttcagcctgttccccggt
caggcttggagggccacacagagcgctctgcagctacgctgcaacggagagggctctctc
tcctctaaagtgcccccggaggtctggaagactgtcctcagccctgtacaggcccccact
gtcaccgcaaacctgccctacaccaatggcaacagccagtctaaacacaagccacccaaa
ccttgccccagcactggctctagttttaaacttagccccagccttagctccaactcctgc
ccacctgccgctaactcggccctgcctgtcttcgagctcctgtgccactccgtcttctgc
ttccagcccagctggctgcccaggttcctggagctggcccagcagcagcagacctctgca
ggcttggggatgggtctaggccttggtggctccacctggagctactctggaggtagggga
tttgcagagaatggagagagcctccccctgtataaacgcgccctttcagctctgcctcta
cctggccccggatcagacctgaaacaatacccagattatgaacaaaaccaggacttggag
gtggatctccttttggtgagtggtaggccaaatgctgtcctccaggctctgaggatcttg
atggggagacgacagtgggagagggtaacccaagtggcacagcggttctgcaggcagagt
cccttactgaacaaagagatctttactaccttactgtgtgaggtggcccagcatcgagac
ctggatccatacctagacctcctctgggctctgtgtcctgaagatcttacggtcacggcc
atacttaacattgtgctgaaaaatataccctcatcatcttccttatctacatccttctcc
ccctcctcaaatatccctccctcctctccctttgctgacccccagtccagccagttgacc
tttgggttgttgaagccgttgctcagtaaggttctacagagagagaccaggcccaaccag
cgatatgctgacatcctccagtcgccctcgttcccccctcccacgccccctcgtcaggct
aaaggactgcctaggtccaccaccgagcctagcataggcttagatcagcagcacaatgat
atcatcagcaacatggcggccatcttggatcaacacgacccatctaaacacaggactgtc
cacgggggcagggtgacctccactccgaaccccgactga
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