Oncorhynchus tshawytscha (Chinook salmon): 112255797
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Entry
112255797 CDS
T05605
Name
(RefSeq) otoferlin-like
KO
K19949
otoferlin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112255797
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112255797
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
C2
FerB
Ferlin_C
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
112255797
NCBI-ProteinID:
XP_042182177
LinkDB
All DBs
Position
LG08:12655714..12695439
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AA seq
1800 aa
AA seq
DB search
MKKSRGHKSDHGKGGGGDEAAILETEDLDFTGGMGGGGGLDPDTISLASVTAVTTNVSNK
RSKPDIKMEPSAGRPVDYQVSVTIVEARQLVGLNMDPVVCVEIGDDKKYTQMKESTNCPY
YNEYFVFDFHVPSDVMFDKILKLSVIHSKNLLRSGTLVGSFKLDIGTVYSQPEHQFFHKW
ALLSDPDDITAGCKGYIKCDIAVVGKGDNIKTPHKATETDEDDIEGNLLLPEGVPAERQW
ARYYVKIYRAEGLPKMNTSIMANVKKAFIGENKDLVDPYVQILFAGQRGKTSIQKSSYEP
IWNEQIVFTEMFPPLCKRMKVQIRDSDKVNDVALGTHFIDLRKIANDGDKGFLPTLGPAW
VNMYGSTRSYTIMDEHQDLNEGLGEGVSFRARLLVSLCVEILDTSSPEVMSSTEVKVEGV
PKISESATGKVEEFFLFGAFLEATMIDRKIGDKPICFEVTIGNYGSEIDGVTKLKSSSGK
KSGGDGDEEETELIHGSSDEEEGDDDNDLVSVSTTPPMKPVITDRNYFHLPYFDRKPCIY
IKSWWQDQRRRLYNANLIDNIADKLEEGLNDVQEVIKTEKAYPERRLRGVLEDLSNGCSQ
FLTLANKDQNQTGRTKLDKERLKSCMRELENLGQQAKTIRTQVKKNTVRDKIKLVQNFLH
KLRFLADEPQHSIPDIYIWMMSNNKRIAYARVPSKDILYSGVDEETGKDCGKVKTIFLKL
PGKKGFGAAGWTVQAKTEIYLWLGLNRQRKDFLSGLPNGFEENKMLKGPGSQSAPPISLT
YMMKQIFQLRVHMYQARSLFAADSSGLSDPFARVFFSTHSQVTEVLNETLCPTWDQLMVF
DNVELFGEVGELRDDPPIIVIEIYDQDTVGKAEFMGRTFAKPITKMADEHYGPPRFPPQL
EYYQIYRGNCTAGEMLAAFELLQIGPHGKADLPPIDGPTDMDRGPILPVPLGIRPVLSKY
RIEVLFWGLRDLKRVNLAAVDRPRVDIECAGKGVQSSLIQNYKKNPNFGTLVKMFEVDLP
ENELLHPPLNIRVVDCRAFGRYTLVGNHAVTTLRKFIYRAADKEANNWNTQEEIIVNYEP
EPSIRKMETMVKLDSGSDAVVKIEVGEDDKGGKKKKRKKGGDEVEEEEFDESMLDWWSKY
FASIETLMEILKAQEAAMADAEEKEDQDISAEGGEIKPDDSPVKGKKGKGKDKRRPGDMP
EKKKHKLNELQVYPKELEKEFDNFEDWLHTFNLFRGKAGDDDDQNMADEDRIIGKFKGSL
CMYKVPVSDEMQREMGFDSNMGMFQNIPTNDPINVVVRVYIIRATDLHPADINGKADPYI
AIKLGKSDIKDKENYLSKQLNPIFGKSFDMEATFPMDSTLTVSVYDWDLVGTDDLIGETK
LDLENRYYSKHRAICGLPSKYAVHGYNVWRDPLKPTQILAKLCKEGKLDGPHYGPGGRVK
VANRIFMGPTEIEDENGLKKQTDEHLALTALKHWEDIPRVGCKLIPEHVETRPLLNPDKP
GIEQGRIEMWVDMFPKDMPAPGPAIDIAPRKPKKFELRVIIWNTDEVILEDDDIFTGEKS
SDIFVRGWLKGQQEDKQDTDVHYHSLTGEGLFNWRFIYPFDYLQAEEKIVISKKESMFAW
DETEYKIPARLNLQVWDADHFSADDFLGAIELDLNRFPRGAKTAKQCSINMVLNEQDIPM
VSIFKQRRIKGWWPFLARDENDEFELTGKVEAELQLMTAEEAEKNPVGEGRNEPEPLEKP
NRPDTAFLWFLMPFKAIKNLICNQYFWLTVKLVVALLLVLILGLFIYSMPGYMVKKLMGA
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatcacgtggccataagtcagaccacgggaaaggaggagggggcgatgaggct
gccatcttggagacagaggacctggacttcacgggagggatgggagggggagggggtctt
gaccctgacaccatctccctggcctcagtcacagccgtcaccactaacgtctccaacaag
agatcaaaaccagacattaagatggaacctagtgccgggagaccagtggattaccaagtt
agtgttaccatcgtagaggccagacagctagtagggctgaacatggacccagtggtctgt
gtggagatcggagacgataagaagtacactcagatgaaggagtcaacaaactgcccatat
tacaatgagtattttgtctttgacttccacgtcccatcggatgttatgtttgacaagatc
ctgaagctttcggtcatccactccaagaacctgctgcgtagtggcaccctggttggctcc
ttcaaactggacataggcaccgtctactcacagccagaacaccagtttttccacaaatgg
gcccttctctctgaccctgatgacatcactgccgggtgcaaaggttacattaaatgtgac
atcgccgttgtggggaaaggagacaacatcaagactccccacaaggccacagaaaccgat
gaagatgacatagaaggtaacctgctgttacctgagggggttcccgcggagcgccagtgg
gctcgctactatgtgaagatctacagagccgagggccttcccaagatgaacaccagcatc
atggctaatgtcaagaaggcttttataggggagaacaaggacctcgtggacccttatgta
caaatactgttcgctggccagagggggaaaacatctatccagaagagcagctacgagccc
atctggaacgagcagatcgtcttcactgagatgtttccaccgctctgcaaacgcatgaag
gtccagatccgagactcggacaaagtgaacgacgtggccctcggaacacacttcattgac
ctgagaaagatcgccaatgatggagacaaaggcttccttcccaccctgggtccggcctgg
gtaaacatgtatggctccacccgtagctacaccatcatggacgagcaccaggacctgaac
gaggggctgggggagggggtgtccttcagggcccgtctgctggtcagcctgtgtgtggag
atcctggacacctcctctccagaggttatgagctccacagaggtcaaggtagagggggtg
cccaaaatctcagagagcgccacagggaaagtggaggagttcttcctcttcggggcgttc
ctggaggccaccatgattgacaggaagatcggggacaaaccaatctgcttcgaggttaca
ataggtaactatgggagtgagattgatggtgtgaccaaactcaagtcgagtagcgggaag
aagagtgggggagacggagatgaagaggagacagagctgatccatggatctagtgatgaa
gaggagggagatgatgacaatgacctggtctcagtgtccaccaccccgccgatgaaacca
gtcatcaccgacagaaactatttccacctgccttactttgatcggaagccgtgtatttac
atcaagagctggtggcaggaccagagaagaagactgtacaatgccaaccttatagacaac
attgctgataaactggaggagggtctgaacgatgttcaggaggtcattaagacagagaag
gcatatcctgaacgcagactgagaggggtcttggaggatctcagcaatggatgcagtcaa
tttctgactctggctaacaaggaccaaaaccagactgggaggaccaagctggacaaagag
agactcaagtcctgcatgagggaactggagaacttaggtcagcaggctaagaccatcagg
acacaggtgaagaagaacacagtgagggataagatcaagctggtgcagaactttctccac
aagctcaggttcctagctgatgagccgcagcacagcatccctgacatctacatctggatg
atgagtaataacaagcgaatcgcctacgcccgtgtcccctccaaagacatcctgtactcc
ggggtggacgaggagactgggaaggactgtggcaaagtcaaaaccatcttccttaagctg
cctggtaagaagggctttggggcagctggctggacagtgcaggctaagacagagatctac
ctgtggctgggtctgaaccgtcagaggaaagacttcctgtctggtctgcccaatggcttc
gaggagaacaagatgctgaaaggacctggctcgcagtctgctcctcccatcagcctcaca
tacatgatgaagcagatctttcagctgagggtccatatgtaccaggctcgcagcctgttt
gcggcagacagcagcggcctctctgaccccttcgccagggtcttcttctccacacacagc
caggtcacagaggtgctgaatgagacactgtgtcccacctgggaccagctgatggtgttt
gacaacgtagaactgttcggagaggtcggcgaactcagggacgaccctcctataatcgtc
atagaaatctatgaccaggacacggtgggcaaagcagagttcatgggcaggactttcgcc
aagcccataaccaagatggctgacgaacactacggacctccacgtttccctccccaacta
gagtactaccagatctatagggggaattgcaccgctggagagatgctggcagccttcgaa
ctgctgcagattggtccgcatggtaaagctgacctgccgcccatcgacggtcccacagac
atggaccgtggtcccatcctacctgtccctctgggcatcagaccagtcctcagcaagtac
aggatcgaggtgctgttctgggggctcagggacctgaagagggtcaacctagccgcggtg
gacaggcctcgtgtggacatagaatgtgccggtaaaggggtccagtcttccctgatccag
aactacaagaaaaatcctaacttcggcaccctggttaagatgtttgaggtggatctgcct
gagaatgagctgctccaccctcccctgaacatcagagtggtggactgcagagcgtttggt
cgctacaccttagtggggaaccatgctgtcaccacactacgcaagttcatctaccgggca
gcagacaaggaagccaacaactggaacactcaagaggagatcattgtcaactacgagcca
gaaccctccatcaggaagatggagaccatggttaagctggactctggatctgatgcggtg
gttaaaattgaggtaggtgaggatgataagggagggaagaagaagaagagaaagaaggga
ggagacgaggtggaggaggaagagtttgatgagagcatgttggattggtggtcaaagtac
ttcgcctcgatcgaaactctgatggagattctcaaggctcaggaggcagctatggcagat
gctgaggagaaagaggaccaagatatttctgctgagggtggagagatcaaacctgatgac
tctcctgtcaaaggaaagaaaggaaaaggaaaggacaagaggaggcctggagacatgcca
gagaagaagaagcacaaactcaatgagctgcaggtttatcccaaggagttggagaaggag
tttgataactttgaagactggcttcacaccttcaacctgttcagagggaaggccggagac
gacgacgaccagaacatggcggatgaggacaggattattggcaaattcaaaggttctctg
tgcatgtacaaagtgccagtgtcagatgagatgcagagggagatgggcttcgactccaac
atgggcatgttccagaacattccaaccaacgatccaatcaacgttgtagtccgggtctat
atcataagagcaacggatctgcatccagcggatatcaatggaaaagctgatccgtacatc
gctatcaaactaggaaagtcagacatcaaagacaaagagaactacctctccaagcaactc
aaccccatctttggcaaatcttttgacatggaagccacatttcccatggactctacacta
acagtgtccgtctatgactgggacttagtgggcactgacgacctgattggggagactaaa
ctggatctggagaaccggtactacagcaagcacagagccatatgtggcctcccatccaaa
tatgccgtccatggctacaatgtgtggcgggaccccctgaagccaacccagatcctggcc
aagctgtgtaaagagggcaagctggacgggccccactatggtcctggaggacgggtcaag
gtggccaacaggatcttcatgggcccaaccgagatcgaagatgaaaatggtctgaagaag
cagacagatgagcacctggccctgacggcgctgaagcactgggaggatatccctcgggtg
ggctgtaaactcatcccagaacatgtggagaccaggccactcctcaaccctgataagcct
ggcattgaacaggggaggattgagatgtgggtggacatgttccccaaggatatgcctgca
cctggaccggccattgatatcgcacccagaaaaccaaagaagtttgaactgagggtgatc
atctggaacacagacgaggtcattctagaggatgatgacatcttcactggagagaagtcc
agtgatatcttcgtgcggggctggctgaaaggtcagcaggaggacaagcaggacacagac
gtccactaccactccctgacaggggagggtctcttcaactggcgcttcatctaccccttt
gactacttacaggccgaggagaagatcgtcatctctaagaaggagtccatgttcgcctgg
gacgagactgagtataagatccctgctcgtctcaacctacaagtctgggatgctgatcac
ttctctgcagatgacttcttaggcgccattgagctggatctgaaccgtttccctcgtgga
gcgaagacagccaaacagtgctccatcaacatggtgctgaacgaacaagatattcccatg
gtgtccatcttcaaacagaggaggatcaagggctggtggcccttcctagccagagacgag
aatgacgagtttgaactcactgggaaagtggaagcagagctgcagctgatgactgcagag
gaggctgagaagaacccagtaggtgaaggacgcaatgaacctgaacccctggagaaaccc
aaccgtccagacacagccttcctgtggttccttatgcctttcaaggccatcaaaaacctc
atctgcaaccagtacttctggctcacggtcaagttagttgtagccctgctgctggtgctc
atcctgggcctcttcatatacagcatgcctggatacatggtcaagaagctaatgggggct
tga
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integrated database retrieval system
