Oncorhynchus tshawytscha (Chinook salmon): 112256002
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Entry
112256002 CDS
T05605
Symbol
ptcd3
Name
(RefSeq) pentatricopeptide repeat domain-containing protein 3, mitochondrial
KO
K17659
pentatricopeptide repeat domain-containing protein 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
otw03029
]
112256002 (ptcd3)
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
112256002 (ptcd3)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PPR_2
PPR_3
PPR_long
PPR_1
SMC_ScpB
Motif
Other DBs
NCBI-GeneID:
112256002
NCBI-ProteinID:
XP_024284681
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Position
LG08:71738544..71745999
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AA seq
671 aa
AA seq
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MAAPGKYVGHYIYKNGRFLLSNFEQFCFRRNFGWSVVVCQQNASTERESAEAIVIPKKKT
WSKWAVLQALASTVNRDPTAPHYMFQDDPYLTPRTSAEFKLYSLSQESGRMAANHIVNKN
PKFFQKDFAEPHIPCLMPETMELCIEEVSEAALLERIMLRKVKAAVDMYDQLLQTGTTVS
PDASNDLLDLICLYGDRDPVQDDKPEAEDVAQEVQEEGRRRKGRLRRASDLVRIVWRENN
NAERIFNLLPERDTRAYSALIRGMVKYGAHVKAFNTYTDMLNNRLTADVHTFNALISAAP
EVRERYTEKWDLIVDLLNQMNEQKVKPNLLTFNALLKALRRCGSLARAQSLHTLSEMKAM
GIAPSLASFDHVLGIFYKAASPSQGQTDILQEVMTEVAGRTFVAQDPDDVNFFSSAMRIC
LDTKDIEAAYKVHDLLSVGENWRMLGDSFQQSIYYGRMFNLLCMMEHIDVVLKWYKELIP
SLYYPNPQGMRDLLQALDTDNRLDMIPQIWKDIRRMGHDNKSDLVDELLSLMARDKHSPE
IQESFAVCALDVKSLYEQGQGARMALEWTATAMTNITSVLLAAQKKQQAWDMLKLFKTKN
RVPSEELMEEFLASIKSSNDPQHAMELVQISASFCLPSTPKLAERVLQAFELSEEQKTIL
SELEVSTEVSE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccccggtaaatacgtagggcattacatttacaagaatggtcgctttcttcta
agtaattttgaacaattctgttttcggaggaactttggatggagtgtagtcgtttgtcaa
caaaatgcatcaactgaaagagagtctgcagaggcaattgtcattcccaaaaagaaaacg
tggagcaaatgggctgtgctgcaggctcttgcatccaccgtcaacagggaccccactgca
ccacattacatgttccaggatgatccttatcttactccaaggacgtctgcagagtttaaa
ttatactccctctcccaggagtctggcagaatggcagctaaccatattgtcaacaaaaac
ccaaagttcttccagaaagactttgctgaaccacatattccatgcttaatgccagagacc
atggagctgtgtattgaggaagtgagtgaggcagcgctgctggagcgcatcatgctgagg
aaggtgaaggctgcagtagacatgtatgatcagctgctacagacgggcaccaccgtgtct
cctgatgcttctaatgacctgctggaccttatttgtctctatggagatcgtgaccctgtg
caagatgacaagccagaggcagaagatgtggctcaggaggtgcaggaggagggcaggagg
aggaaagggaggctgcggagagcctccgacttagtgaggatagtttggagggagaacaac
aatgcagagaggatctttaaccttcttccagaacgtgacacacgagcatactctgctttg
atcagaggcatggtgaagtatggagctcatgtgaaggcattcaatacatacacagacatg
ctgaacaacagactgactgcggatgtccacaccttcaatgctctgatctctgcggcacca
gaagtccgggagaggtacactgagaaatgggacctgattgttgacttactaaatcagatg
aatgagcagaaggtgaagcccaatctgctgacgtttaatgctttgctgaaggcccttcgt
cgctgtggctccttagccagggctcagtctctgcacacgctcagtgagatgaaggctatg
ggcattgcacccagtttggcttcttttgaccatgttctgggcattttctacaaagcagcg
tctccttcccaagggcagactgatatcctacaggaagtgatgactgaggtggcaggaagg
acattcgttgctcaggatccagatgatgtaaactttttctccagtgccatgagaatttgt
ctggataccaaggacattgaggcagcatacaaggtgcatgacctgctcagtgtgggagag
aactggaggatgctgggagattccttccaacagagtatctattatggcagaatgttcaac
ctgctctgcatgatggaacacatagatgtggtgctgaagtggtacaaagaactgattcct
tctctctattaccccaatccacaaggaatgagagatctgctccaggcactggacactgat
aacagattggacatgatcccacagatatggaaagacatccgacggatggggcatgacaac
aagtccgatttagtggatgagctgctgtcactcatggccagggacaagcacagtcctgag
atccaggagtcttttgcagtgtgtgcgctggatgttaagagcctgtatgagcaggggcaa
ggagccaggatggctctggagtggacagccactgccatgaccaacataacctctgtccta
ctggcagcccagaagaagcagcaggcatgggatatgttgaagctcttcaagaccaaaaac
agagttccatctgaggagctgatggaggagttcctggccagcatcaagagcagcaacgac
cctcagcacgccatggagctggtacagatttcagctagcttctgtctccccagcaccccc
aaactggcggagagggtactgcaggcgtttgagctctctgaagaacagaagactattctg
tccgagctggaggtctcaactgaagtcagcgagtga
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