Oncorhynchus tshawytscha (Chinook salmon): 112256247
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Entry
112256247 CDS
T05605
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112256247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112256247
04121 Ubiquitin system [BR:
otw04121
]
112256247
03036 Chromosome and associated proteins [BR:
otw03036
]
112256247
Enzymes [BR:
otw01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
112256247
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
112256247
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
112256247
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
112256247
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
112256247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
Cupin_8
SR-25
Motif
Other DBs
NCBI-GeneID:
112256247
NCBI-ProteinID:
XP_042181622
LinkDB
All DBs
Position
LG08:57804764..57822174
Genome browser
AA seq
1322 aa
AA seq
DB search
MEDQNPRYSKRLRTGTRRRYLDDGISDDEIEGKRTFDLDEKLQSDRFNSNLVKHMEGKDF
TFEYIQREGLRDPLIFEKKDGLGLEMPDSDFSVSDVKLFVGSRRMVDVMDVTTQKGIEMS
MAQWRRYYETPPSERDKLYNVISLEFSHTKLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNSIIDMQYPKVQKYCLMSVQGCFTDFHVDFGGTSVWYHILRGGKVFWLIPPTPQNLE
LYEDWVLSGKQGDIFLGDKARDCQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYNIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNTSHLTPEFQKHSLGVG
LTRDSSENKLNGHVKNSTSEEHKDRDDDEEGKEEERESKVKMEESDEDVSPALGATKLGV
RVNLTPLELEGLWNLLGKLEELPAHKKCVPAGIRNAPALLHDIRALLEDHRNDDPKLSYT
GKPIVKWPKRPSWYRPPSPSPVDRLRPATPYKTAVPRPARAATSLSALRRRRVRCKRCAA
CQREECGECNFCRDMRRFGGPGRMKKGCMMRQCLAPGLPNSAVCVLCGEGQGKQELADAS
PSSTTLMECSNCAQIAHPDCIKVPGEGRINKDLPSCWECPKCYQDKDGSSSESSSSDEDS
MASTGSLTTSKHAHREGIGVEEAGGGVRKGRRGRPPLTSSLSQRRAPPPSQRLLLQQQQN
RKRAGALELRLRKSIKLERSKILESKQTSSLERSHKLLGSQRLAHLQRGVSSRLHSPVGR
LSRGRGSFRGSPTGARLQPPQPSLSLDPAGRGDGRRGQGRGVRLRGGAAGRGQRHGGAEE
ESDSSTSSSSSSSCSSDEEEDREKGVRSGRGDKENRPQRRVTAKEDEGSGESNQNEEEEE
AAMDEDWREGGQAQAEPPVLVVSDISDDLMKGSYLTVTLQPSRAKHDPGAIVPKLEAAVT
PRPAPPGQIYTQRKNLARPPLRNHAPDPARSDRHTHIRGSNIHTGSSHEDERRTRPGRPE
RTNNGASSSRVPPLHLPLSALHDGEREVANGGSEPGCEREVWVSVFRYLTRAELCVCMAV
CKNWYKWSLDKRLWMRINLTVSKAISPQALSGIIKRQPVAMDLSWTSISKKQLTWLVNRL
PGLKDLMLSGCSWSSISALSSTSCPLLRTLDLRWADGVKDGQIRDLLNPPGCDNRSQLRN
MQSFRLAGLEISDSTLRLVIRHMPLLTRLDLSHCGGLTDQSINLLTAVGSSTRNTLTELN
LGGCSKLTDACLRYLRRLSCLSLLDLRECKGVSRKACEAFISELSVNTLYCLSEDKLIQR
IS
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccaaaacccccgttacagcaagcgcttgcgtacggggacgcggcggcgctac
ctcgatgacgggatctcggacgatgagattgaggggaagaggacctttgacctggatgag
aagctgcagagtgacaggttcaactccaatctggttaaacacatggagggaaaagacttc
acgtttgagtacatccagagggaggggctgagagaccctctgatctttgagaaaaaagac
ggcctcggcttagagatgccagactctgatttcagtgtgagtgacgtcaagctgtttgta
ggcagtcggaggatggtcgacgttatggatgtgaccactcagaagggcatcgagatgtcc
atggcccaatggcggcggtactacgagaccccgccttcggagcgagataagctctataac
gtcataagcctggagttcagtcacaccaagctggagaacctggtgaaacgacccgcctcg
gtggatttgatcgactgggtggacaacatgtggccaaggcacctgaaggagcgacagaga
gactcaaccaactccatcatagacatgcagtatcccaaagtgcagaagtactgtctgatg
agtgtccagggctgcttcacagacttccacgttgactttggtggtacgtcggtctggtac
cacatcctgcgggggggcaaggtgttctggctgatcccacccacaccccagaacctggag
ctgtatgaggactgggtgttgtcagggaaacaaggggacatcttcctgggagacaaggct
cgggactgtcagaggattgagctgaagcagggctataccttcatgatcccctctggttgg
atccatgctgtgtacacccctgaggacacgctggtgtttgggggaaacttcctccacagc
ttcaacatccccatgcagctcaacatctacaacatcgaggaccgcacacgagtcccggct
aagttccgataccccttctactatgagatgtgctggtacgtgctggagagatacctctac
tgtctgactaacacctctcacctcacccctgagttccagaagcactcgctcggtgttggt
ctgactcgagactcctcggagaacaaactcaacggccatgtgaaaaacagcacgtcggag
gagcataaagacagagacgatgatgaggaaggaaaggaggaggaaagggagagcaaggtc
aaaatggaagagagcgacgaggatgtctctcccgctctgggtgccactaagctgggggtg
agggtaaacctgacccccctggagctggaggggctgtggaacctgctggggaagctggag
gagctgccagcccacaagaagtgtgtccccgcaggcatccgcaacgcccccgccctgctc
cacgacatacgggctcttctggaagaccaccgcaacgacgaccccaagctgtcttacact
gggaagcccatcgtcaagtggcccaagaggccgtcgtggtaccggcccccttccccctcg
ccggtggaccgcctgcgcccggccacgccctacaagaccgcggtcccgcgcccggctcgg
gccgccacctcactctcggccctgaggcggcgacgcgtgcgctgcaaacgctgtgcggcc
tgccagagggaggagtgcggcgaatgcaacttctgcagagacatgaggaggttcggagga
cccgggcgcatgaagaagggctgcatgatgcggcagtgtctggctcctggcctgcccaac
tcggcggtgtgtgttctctgtggagagggccaggggaagcaggagctggcggacgctagc
ccatcctccacaaccctgatggaatgctccaactgtgctcagatcgcccaccccgactgc
atcaaggtgccaggggagggcaggatcaacaaggacctgcccagctgctgggagtgtccc
aaatgttaccaggacaaagatggctcctcatcagagtcgtccagcagtgatgaggacagc
atggcgtctacaggttctctcactacgtcaaagcatgcccaccgggaagggataggagta
gaggaggcaggaggtggggtgaggaaggggcgacgtggcagaccccccctgacgtcctct
ctgtcccagcggagggcgccccctccctcccagcggctgctactgcagcaacaacagaac
aggaagagagccggcgcactggagctacgactccggaagagtatcaaactggagcgcagc
aaaatcttagagtcgaagcagacgtcatctctggagcgttctcacaagctcctgggctcc
cagcgtctggcccacctccagagaggggtgtcctctcgccttcactcccctgtcggcaga
ctgtcccggggccgtgggtccttcagaggctcccctacaggggcacgactccagcccccc
caaccctccctcagcctggaccccgcaggcaggggagatgggcgcagggggcaagggcga
ggagtaaggctcagaggaggagcagcaggaagaggacagagacacggtggagcagaggaa
gagagtgatagcagtaccagcagcagcagcagcagtagttgtagtagtgatgaggaggag
gacagggagaaaggcgtgcggagtggcagaggggacaaagaaaaccggccgcagagacga
gtaacagccaaagaagatgaggggagtggggagtccaaccaaaacgaagaagaagaggag
gcggcgatggatgaagactggagggaaggaggacaggcacaggcggagccaccggtcctc
gtagtttctgacattagcgacgacctcatgaagggctcgtatctcactgtgacccttcag
ccgtcgagggccaaacatgatccgggggccatcgtccccaaactggaggctgcagtcacc
ccccgccctgcccctcccggacagatttacacacaacgcaagaatcttgcccgaccacca
ctcaggaaccacgccccagaccctgcacgctcagatagacacacacacatccggggaagc
aacatacacactggcagctcccatgaagacgagaggagaacgaggccgggcagaccagag
aggacaaacaacggtgcttcctcctcccgggttcctcctctacacctccctctgtcggct
ttacacgatggggagagggaggtggcgaatggagggagcgaaccgggctgtgagagggag
gtgtgggtatcagtcttccgttacctgactcgtgctgagctctgtgtctgcatggccgtc
tgcaagaactggtacaaatggagcctggataagaggctgtggatgaggatcaatctgacc
gtgtctaaagcaatcagtcctcaggccctgtcgggcatcatcaaacgccagccagtcgct
atggacctctcctggacctccatctccaagaaacaactcacgtggctcgtcaaccgcctg
ccagggctgaaggatctcatgttgtctgggtgctcctggtcttctatttcggctctgagc
tcgaccagttgccccctcctgcgcacgctggacctgcgctgggccgacggggtgaaagat
ggacagatccgagacctgctcaaccccccagggtgtgataaccgcagtcagctgaggaac
atgcagtctttccgtctggcagggctggagatcagtgactccactctgaggctggtgatc
agacacatgcccctgttgacccgtctggacctgtcccactgcggaggcctcacggaccag
tccatcaacctgctcactgccgtgggctcctccacacgcaacacactcactgagctcaac
ctggggggctgcagtaagctgacagatgcgtgtctgcggtacctccgccggctctcctgc
ctctccctgctggacctgcgggaatgcaagggtgtctcccgcaaagcctgcgaggccttc
atctcggagctgtccgtcaacaccctctactgcctatcagaggacaagctgatccagagg
atatcctag
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