Oncorhynchus tshawytscha (Chinook salmon): 112256663
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Entry
112256663 CDS
T05605
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04115
p53 signaling pathway
otw04145
Phagosome
otw04148
Efferocytosis
otw04350
TGF-beta signaling pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
112256663
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112256663
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112256663
04148 Efferocytosis
112256663
09143 Cell growth and death
04115 p53 signaling pathway
112256663
09144 Cellular community - eukaryotes
04510 Focal adhesion
112256663
09142 Cell motility
04820 Cytoskeleton in muscle cells
112256663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112256663
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112256663
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112256663
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112256663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_ADAMTS
cEGF
TSP1_CCN
EGF
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
112256663
NCBI-ProteinID:
XP_042181334
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All DBs
Position
LG08:complement(30345103..30358188)
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AA seq
1172 aa
AA seq
DB search
MKLTGVFLLLVLWNCEGSRVAESRDDNSVYDLFELVKVNKRHQGVTLVKGADPYSPAYKI
LNADLIPPVPEISFRDLIDSIQAERGFLLLVNFKQFKKTRGSLLTVERDDGSGPLFEIIS
NGKAQTLDVVYSTGNKQQVVSIEDADLATGHWKNITLFIQEDRAQLFVGCEEINISEMDV
PIQKVLTHEVADIARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQSSATLTDV
MTLDNPVNGSSPAIRTDYTGHKTKDIQQVCGFSCEDITSMFKELKGLGVIVKQLSNELNR
VNKESTLLMNQMNIHSGVCLHNGIVHKDKDEWTVDDCTECTCQNSATVCRKISCPLMPCA
NATVPDGECCPRCGNPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGQG
RETEVCQESPCPINGGWGPWSLWDTCSVTCGGGLQTRQRLCNNPAPKYNGKECQGDTKTS
QLCGKEDCPINGCLSNPCFAGAKCTSFDDGSWKCGSCPVGYTGNGINCKDIDECKEVPDA
CFTLNAVHRCENTAPGYNCLACPPRYSGPQPFGRGVEQATAKKQVCTPRNPCQDGTHDCN
KNANCIYLGQFSDTMFRCECKPGYAGNGHICGDDTDLDGWPNKDLLCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDACDHDDDNDGIPDDRDNCPMVYNPAQYDVDTDDVGDRCDNCV
HESNPDQVDTDNNGEGDACAIDIDGDGILNERDNCPYVYNVDQRDTDGDGVGDHCDNCPL
EHNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNMDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNILDIYDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGVSIKVVNSTTGPGEHLRN
ALWHTGDTAGQVRTLWHDPKNIGWKDYTAYRWHLVHRPKSGLIRVVMYEGKRIMADSGNI
YDKTYAGGRLGMYVFSQEMTYFSDLKYECRDS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacaggagtctttctccttttggtgctttggaattgtgagggcagcagggtg
gcagagagtagagatgataacagtgtatacgacctattcgagcttgtgaaagtgaacaaa
aggcaccaaggtgttaccttggtaaaaggcgcagatccttacagcccagcctataagatc
ctgaacgcagacctgatccccccggttcccgagatctccttcagggacctcattgattcg
atacaagctgagaggggattccttctcctggtcaacttcaagcagttcaaaaaaaccagg
ggcagtcttttgactgtggagagggatgacggatcaggaccgttattcgaaatcatttct
aatggcaaggcgcaaactctggatgtggtatactccaccgggaacaagcaacaggtagtg
tccatagaagatgcggatctagcgactggacactggaagaatatcacgctgttcattcag
gaggatcgtgcccagctgttcgtcgggtgtgaagagatcaatatatcagaaatggacgta
cccatccaaaaggtcctgacgcatgaggttgccgacattgcccgtctgaggatcggaaaa
ggagctgtgaaagatagatttatgggagtgcttcagaacgtgcgcttcgtttttggaacc
actttggaggcgattttacgcaataagggatgccaaagctctgcaactttgactgatgtc
atgacactggacaacccagtaaatgggtccagcccagcaataaggactgattacactggc
cacaaaaccaaagatattcagcaggtctgtggtttttcctgtgaggatatcaccagcatg
ttcaaggagctcaaggggcttggtgtgattgttaagcagctgtcaaacgagctcaacaga
gtgaataaggagagcactctgctcatgaaccagatgaacatccacagtggggtctgtctt
cacaacggcattgtgcacaaggacaaagatgagtggactgtggacgactgcacagagtgt
acctgccagaactctgccactgtgtgtcgcaaaatctcttgccccctgatgccctgtgcc
aatgccaccgtgcctgatggagagtgctgcccacgttgtggaaacccgagtgactatgct
gaggatggctggtccccctggtctgaatggacccattgttctgtgtcttgtggacggggt
atccagcagcgaggtcgctcctgcgaccgcatcaacagcaactgcgaaggcacttctgtg
cagacccgcgactgctaccctcaggaatgtgacaagcgctttaagcaggatggtggctgg
agccactggtctccctggtcttcctgctctgtgacctgtggtgagggagtcatcacccgc
atccgcctctgcaactcccccactccccagatgggaggcagagactgtcaaggacagggc
cgagagacagaggtctgccaggaatcaccttgtccaattaacggaggctggggaccctgg
tctctgtgggacacctgttctgtcacctgtggaggtggactccagactcgccagcgtctc
tgtaacaaccctgcccccaagtacaatgggaaggaatgtcagggtgacaccaaaacatcc
caattgtgtggcaaagaggactgccctattaatggctgtctgtccaacccgtgctttgct
ggagctaagtgtaccagctttgatgatggttcctggaagtgtggctcatgcccagtgggc
tacaccggaaacggcatcaactgcaaggacatcgacgagtgcaaggaggttcctgatgca
tgcttcacactcaacgcagtccaccgctgtgagaacactgcgcctggctacaactgcctt
gcctgcccccctcgctactcaggaccacagcccttcgggaggggagtggagcaagccaca
gccaagaaacaggtgtgcacaccccgtaacccctgccaagacggcacccatgattgcaac
aagaatgctaactgtatctacctgggtcagttcagcgacaccatgttccgctgtgagtgc
aaacctggttacgctggcaatggccacatctgtggagatgacaccgacctggatggatgg
cccaacaaagacctcctgtgtgtggagaacgccacctaccactgcaagaaagacaactgt
ccaaaccttcccaactctgggcaggaggaccatgacaaagatgggcttggtgacgcttgc
gatcacgatgatgacaatgatgggatccctgatgatagggacaactgcccaatggtctac
aaccctgctcagtatgatgtggacacagatgacgttggtgatcgctgtgataactgtgtg
catgagagcaaccctgaccaagtcgacacagacaacaacggagagggagatgcctgtgct
attgacattgacggtgatggtattctaaatgagagggacaactgcccctatgtctacaat
gtggaccagagagacactgacggggacggagtgggagaccactgcgacaactgccctctt
gagcacaacccagaccagattgactctgactcagatcgtgtgggagacaagtgcgacaac
aaccaggacattgatgaggacggtcatcagaacaacatggacaactgtccctatatcccc
aacgccaaccaggccgaccacgacaaagatggcaagggtgacgcctgcgaccacgatgac
gacaatgacggtatccctgacgacaaggacaactgcaggctggcctttaaccctgaccag
ctggactctgatggtgatggtcgtggagatgtttgcaaagatgactttgaccaagataac
atacttgatatctacgatgtgtgccctgagaactttgccatcagcgagacggacttccgc
aggttccagatggtaccactggaccccaagggcacctcccagatagaccccaactgggtg
gtccgccaccagggcaaagagctggtgcagactgtcaactgtgaccctggcatcgctgtt
gggttcgatgagtttaacgcagtggacttcagtggaacgttcttcatcaacacagacagg
gatgatgactacgctggctttgtgtttggctaccagtccagctccaggttctatgtggtg
atgtggaagcagatcacacagacctactggtcccacaccccgaccagagctcagggctac
tctggagtgtccatcaaagtagtcaactccaccacgggacctggggagcatctgaggaac
gccctttggcacaccggtgacactgctggacaggtacgtactctgtggcacgaccccaag
aacattggctggaaagactacactgcctacagatggcacctggtccacaggcccaagtct
ggactcatcagagttgtgatgtatgaaggcaagagaatcatggcggattctggaaatatc
tacgacaagacttatgctggtggaagactaggcatgtatgtcttctctcaggagatgaca
tacttctcagacctcaaatacgaatgcagagattcttaa
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