Oncorhynchus tshawytscha (Chinook salmon): 112257103
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Entry
112257103 CDS
T05605
Name
(RefSeq) short transient receptor potential channel 3
KO
K04966
transient receptor potential cation channel subfamily C member 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112257103
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112257103
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
YVC1_C
Motif
Other DBs
NCBI-GeneID:
112257103
NCBI-ProteinID:
XP_024286440
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Position
LG08:50035688..50103561
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AA seq
836 aa
AA seq
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MTGAREKGRRPAMRGPAFMFNDHTTSMTAEEERFLDAAEYGNIPVVRKMLEESTTLNVNC
VDYMGQNALQLAVGNEHLEVMELLLRRDNLARIGDALLLAISKGYVRIVEAILAHPSFQA
SERLTRSPCELQDDDFYSYDEDGTRFSPDITPIILAAHCQKYEVVHMLLLKGARIERPHD
YFCKCPECTEKQGKDAFSHSRLRINAYRGLASPAYLSLSSEDPVLTALELSNELTKLANI
EKEFKNDYRKLSMQCKDFVVGVLDLCRDTEEVEAILNGDVTAEKEAGKGLRSLLSRVKLA
IKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTIAVKCLVVVAVAFGLPLLAMGYWFAPC
SRLGNVLRSPFMKFVAHAASFIIFLCLLLFNASDRFQGISTMPNVTVTDHPMQIYRVKTT
EFSWTEMLIMVWVTGMMWSECKELWTEGPREYMQQLWNVLDFGMLSIFIAAFTARFFAFL
QATRAQQYVNEKIHTTDLSLVTLPPEVKYFTYARDKWLPSDPQLISEGLYAIAVVLSFTR
IAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVFLAFMIGMFILYSYYLGAKVNPAFT
TVEESFKTLFWSIFGLSEVSSVVLKYNHKFIENIGYVLYGIYNVTMVVVLLNMLIAMINS
SYQEIEDDADVEWKFARSKLWLSYFDNGKTLPPPFSIVPTPKSFYHHIRWIVGMMHCRQR
SVKKDQELGLDSSKSRLNLFTQSNLRIAESHSILNQPTCYQQIMKRLIKRYVLKAQVDKE
NDEVNEGELKEIKQDISSLRYELLEDKSQATEELSLLIQKLSDKLNLGPTTRLPYK
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgacaggggcgcgggaaaagggtcgtcgaccagcgatgcgtgggccggccttcatgttc
aacgaccacaccaccagcatgaccgccgaggaggagcgctttctggacgccgccgagtat
ggcaacatccctgtggtccgcaagatgctggaggagtccaccacgctcaatgtcaactgt
gtggactacatgggccagaatgcattgcagcttgcggtgggcaacgagcatctggaggtg
atggaactgctcttgcggagggacaacctggcacgcatcggtgacgccttactcctggct
atctcaaaagggtatgttaggatcgtggaagccatcttggcccatccatccttccaagcc
agcgagcggctgacgcggagtccgtgtgagctgcaggacgatgacttctactcgtatgac
gaggatggcacacgcttctcgcccgacatcacccccatcattctggctgcacactgccag
aagtacgaggtggtacacatgctgctgttgaagggcgctcgcattgagcggccacatgac
tacttttgcaagtgcccagaatgcaccgagaaacagggcaaagacgctttcagccactca
cgtttgcgcatcaatgcctaccggggcctggctagcccggcgtacctttcactgtctagc
gaggacccggtgctcaccgcgctggagctcagcaatgaactgaccaagttggccaacatc
gagaaggagttcaagaatgactatcgcaagctgtctatgcagtgtaaggactttgtagtg
ggagtgctggacctctgtcgggacacggaggaagtggaagccattttgaatggagatgtt
actgctgagaaggaggcggggaagggccttcgctctctcctgagcagggtcaaactggcc
atcaagtacgaggtgaaaaagtttgtggcccaccccaactgccagcagcagctgttgacg
atctggtatgagaacctgtcgggcctgagggagcagaccatcgctgtgaagtgcctggtg
gtggtggcggtggcctttggtctgcccctactggccatgggctactggttcgctccctgc
agtcggctaggaaatgtcctgcgcagccccttcatgaagtttgtggcccatgccgcctcc
ttcatcatcttcctgtgcctgctgttgttcaacgcatcagaccgcttccagggcatcagc
accatgccaaacgtgaccgtcactgaccaccccatgcagatctaccgggtcaagaccacc
gaattcagctggaccgagatgctcatcatggtctgggtcacagggatgatgtggtcggag
tgtaaggagctgtggaccgaggggcccagggagtacatgcagcagctgtggaacgttctg
gacttcggcatgctttccatcttcattgccgctttcaccgctcggttctttgccttcctc
caggccaccagagcccagcagtacgtcaacgaaaagatccacaccaccgacctctcccta
gtgaccctacccccggaggtcaaatactttacctacgcaagggacaaatggctgccatcg
gacccccagctgatctccgaagggctgtacgccatcgctgtggtgctgagcttcacacgc
atcgcttacattctgccggctaatgagagctttggaccactccagatctccctgggccgc
acggtcaaagacatcttcaagttcatggtcctgttcatcatggtcttcctggcgttcatg
atcggcatgttcatcctctattcttactacttgggtgccaaggtcaacccggccttcacc
acggtggaggagagcttcaagactctgttctggtctatatttggactgtccgaggtgtcc
tctgtggtgctcaagtacaaccacaagttcatcgagaacattggctatgtgctctatgga
atctacaacgtgaccatggtggtggtgttgctcaacatgctgatcgccatgatcaacagc
tcctatcaagaaatcgaggacgatgcggacgtggagtggaagtttgcacgctccaagcta
tggctgtcgtactttgacaacggcaagacactgcctcctcccttcagcatcgttcccact
cccaagtccttctaccaccacatcaggtggatagtcggcatgatgcattgccgacaaagg
agtgtgaagaaggatcaagagctggggttggacagttcaaagtccaggctcaatctcttc
acccagtccaacctacgcattgcagagtcccacagcattctgaaccaacccacttgctat
cagcaaatcatgaagcgactcatcaaacgctacgttttgaaagcacaagtggacaaagaa
aacgacgaggtcaatgaaggtgaactgaaagaaatcaagcaggacatctccagtttacgt
tacgaactcctggaagacaagtctcaggctacagaggagctgtccttgcttatccagaaa
ctgagtgacaaattgaacctaggccctactacacgcttgccctacaagtga
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