KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112257585
Entry
112257585         CDS       T05605                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    112257585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:otw03000]
    112257585
   04121 Ubiquitin system [BR:otw04121]
    112257585
   03036 Chromosome and associated proteins [BR:otw03036]
    112257585
Enzymes [BR:otw01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     112257585
Transcription factors [BR:otw03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    112257585
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     112257585
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    112257585
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     112257585
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like F-box JmjC Cupin_8 LRR_4 LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 112257585
NCBI-ProteinID: XP_024287028
LinkDB
Position
LG09:22233188..22277426
AA seq 1388 aa
METGADSGRKLRSICRTMYDENEDFSDVEEIANVRGFNLEEKLVSNSYNRHFVQLMDGKD
FTYEYVQREALQTPLIFKAKDGLGLRMPDPEFTVSEIKGLVGSRRAVDVMDVSTQKGSEM
SMAQFARYYETPEEERDKLFNVISLEFSHTKLENLVKRPTVVDLVDWVDNMWPLKLKQRQ
TEATNVISEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVFWLVPPTPHNL
ALYEDWVLSGKQSDVFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLSIYEIENRTKVHSKFRYPFYNEMCWYVLERYVHCLTKRSHLAPEFHRDPLLI
DLETKLSTESPSSDSRSQDMDEEDSCETQQERDERSDRSAFDDPCSPDNRKGKPSAPQPL
KAALDDSCNPTSIQPPEFPKTPSGSPGSESQSKWTHLTEFELKGLKALVEKLEALPENKK
CVPDGMEDPQALLDDMKVVLKEHEDDDPKMAATGVPVVCWPKKSSKQQRPPNRPKPKMAA
SSPAPAVKLSASRSTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIM
RQCIAPVLPHTAVCLVCGEAGKEDTVEEEEDKFNLMLMECSICNEIVHPLCLKVKNSGGV
VNEELPNCWECPKCNHAGKTGKAVKQKRGPGFKYASNLPGSLLKDSRLNRDVKEEADLPS
VPTSPTAVKRKAERDDTPKRKAEEYPPLKKRSPMLSLGGLPHPRPRPEDNPLRKKRKLFD
IKDEDEPPVVKKKKKPPKPDDTFTSKLLRPIKQEKVDEDEDHEDDRYTGDRVAAKGKREE
EEDKEDDEEEEDEKDGVEDSKDGKVKTMLSPLLRTSAARESDQSCSSSPRAGPSSEGGDA
PDKTLGQLKAHQRRRLPNKELSKELSKELNLEIQKTEDCLANQNRRPLKGENSPTNNNRR
PLKTEDSSINQNRRPLKTEDSPTNHNRRPIKTEDGLSNHNRRPLKTEDCLANQNHRPMKT
EPESDGEEPKPKRPLDNGSSDLGDWLHPRGREVNGTPRQLSPLGWNRSPPITPICPRPPP
CHSPPKCVQMERHVIRPPPISPPPDRLPLDDGQAHVMRREVWMVVFSHLAHRDLCVCMRV
CKTWNRWCCDKRLWTQIDLNRCKSITPLMLSGIIRRQPVALDLSWTNISKKQLSWLINRL
PGLRMLLLSGCSWVAVSALCTASCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDN
RSKLRNVVDLRLAGLDITDTSLRLLIRYMPQLTRLDLSYCNHVTDQSVNILTAAGTTTRD
SLTDINLSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVTKEGCEQFIAEMSVSVQFELVE
EKLLLKLS
NT seq 4167 nt   +upstreamnt  +downstreamnt
atggaaactggtgcagattctggacgcaagctgcgctccatctgccggacaatgtacgac
gaaaatgaggacttctctgacgttgaagaaattgcaaatgtcaggggttttaatctggag
gagaaacttgttagcaattcgtacaacagacatttcgttcagttgatggacggcaaagat
ttcacttatgagtatgttcaaagagaagcacttcagacccctcttattttcaaagccaaa
gatggactgggactcagaatgccagacccggagttcaccgtcagtgagattaagggtttg
gttggtagccgtcgtgccgttgatgtgatggacgtgagcactcagaaaggctctgagatg
agcatggcccagtttgcccgctactatgagacgcctgaggaggagcgggacaaactcttt
aatgttatcagcctggagttcagccacaccaaactggagaacctcgtcaagaggcccact
gtggtggatctagtggactgggtggacaacatgtggccccttaaactgaaacaaagacaa
actgaagccactaatgtcatctcagagatgaagtaccccaaagtacagaagtactgtttg
atgagcgtgaagggctgctatactgacttccacattgatttcgggggcacgtctgtgtgg
tatcacgtgttcaagggaggaaaggtgttctggctggtgcctccgacacctcataacctt
gccctgtatgaggactgggttctgtcaggcaagcagagtgacgtcttcctgggagatcgt
gcagatggctgccagagagttgagctaaaacagggctacaccttcttcatcccctccggc
tggattcatgcagtctacacccccgaggacacactggtgttcggaggcaacattctgcac
agctttaacattcccatgcaactctcaatctatgagatagagaacaggactaaggttcat
tccaagttccgctacccgttctacaatgagatgtgctggtatgtcctggagaggtacgtg
cactgcctgaccaagcgctcccatctcgctccggagtttcacagagatcctctgctaatc
gatttggagacaaagctgagcactgagagcccctcctctgactcgcggagtcaggacatg
gacgaggaggactcctgcgagacgcagcaggaacgagatgaacggagtgacaggtcagca
tttgatgacccctgctctcctgataacaggaagggtaaacccagcgcccctcagcctctt
aaagctgccttggatgatagctgcaaccccacctccatccagcctccagagttccccaaa
accccctctggttcgccaggctcagagtctcagagtaaatggactcatttgactgagttt
gaactgaagggccttaaggccctggtggagaagctggaagcactccccgaaaataagaaa
tgtgtcccagatggcatggaggacccccaggccctgctggatgacatgaaggttgtcttg
aaggaacatgaagacgatgatcccaaaatggctgccactggtgtacctgtggtgtgctgg
cccaagaagtcttccaagcagcagagacctcccaacaggcccaaacccaaaatggcggcc
tcgtctcctgcgcctgcggtcaagctgtcggccagccggagcacgtctggggcccggaga
aggaggacgcgatgtcggaagtgtgaggcgtgcctgaggacagagtgtggagaatgccac
ttctgtaaagacatgaagaagtttggagggccgggtcgcatgaaacagtcctgcatcatg
aggcagtgtatcgcgcctgtcctgccccacactgcagtgtgtctggtgtgtggggaggca
gggaaggaggacacggtggaggaagaggaggacaaatttaacctcatgctcatggagtgc
tccatctgcaatgagatagtccatcccctctgcctaaaggtgaagaattctggtggagtt
gtaaatgaagagttgccaaactgctgggagtgtccaaaatgcaaccatgcagggaagacc
gggaaagctgtcaagcaaaaaagaggaccaggattcaagtacgcgtccaaccttcccggg
tcgctgctgaaggactcgcgattgaaccgtgacgttaaggaagaggccgacctgcccagt
gtgccaacatcacccactgcagtgaagaggaaggcagagcgtgatgacacccccaagagg
aaagcagaggaatatcctcctctgaagaaacgttctcccatgttgtctctgggcgggcta
cctcatccccgacccaggcctgaggacaaccctctgaggaagaagaggaagctgttcgac
atcaaagatgaggacgagcctcctgttgtcaagaaaaagaagaagcccccaaaacctgat
gacaccttcacctccaagctgttacggcccatcaagcaagagaaagttgatgaggacgaa
gaccatgaagatgacagatacacaggggacagggttgcagctaaagggaaaagagaagag
gaggaagataaggaggatgatgaggaggaagaagatgagaaagatggtgtagaggacagt
aaagatggtaaagtaaagactatgctgagtccactgctacggacgtctgcagccagagag
agtgaccagtcctgctccagctctccccgggcagggcccagcagtgaggggggcgatgcc
ccagacaagacacttggccagctgaaggcacaccagcgacgccgcctacccaacaaagag
ctgagcaaggagctgagcaaagagctcaacctggagatccagaagaccgaggactgcttg
gccaatcagaaccgcagaccactgaagggggagaacagcccaaccaataacaaccgtcga
ccactgaagactgaggactcctctatcaatcagaaccgcagaccactaaaaacagaggac
tcccccaccaatcataaccgcaggccaattaagacagaggatggcctatccaatcacaac
cgtcgaccattgaagacagaggactgcttggccaatcagaaccacaggccaatgaagacg
gagcctgagagtgacggggaggagcctaagcccaaacggccactcgacaacggcagcagt
gacctcggagactggctccaccccagggggcgggaggtgaatgggacgccccgccagctc
tcgcccctggggtggaaccgcagccctccgatcacacctatttgcccacgcccccctccc
tgccactcaccgcccaagtgtgtacagatggagcgtcacgtgatccggccgcctcccatc
agccccccaccagacagacttcccctggatgacggacaggcccacgtgatgcgcagggag
gtgtggatggtcgtgttcagccacctcgcacacagagacctgtgtgtctgcatgcgtgtc
tgcaagacctggaacagatggtgctgtgataagaggctgtggacgcagatcgatctgaac
cgctgtaaatccatcactcccctcatgctgagtggcatcatccgcagacagcctgtggct
ctggacctcagctggaccaacatctccaagaagcagctcagctggctcatcaacagactg
ccaggtctgcggatgctgctgctctcaggctgctcctgggtggctgtgtctgccctctgc
accgccagctgcccgctgctacggaccctggacgtccagtgggtagagggtctcaaagac
gcccagatgagggatctgctctcaccccccacagacaacagaccaggtcagctggacaac
aggagtaagctgcgaaatgtggtggacctgcgtctggccgggctggacatcacggacacc
tctctgcgcctcctcatccgctacatgccccagctgaccagactggacctgagctactgc
aaccacgtcactgaccagtcagtcaacatcctgaccgctgcagggaccaccaccagagac
tcgctcactgacatcaacctctccgtgtgcaacagagtcacggaccagtccctgacttac
ttcaagcgctgtggaagcatctgtcatattgacttgcgatactgcaagcaggtgaccaaa
gagggctgcgagcaattcattgctgagatgtcagtgagtgtacagtttgaactagtagag
gagaaactactgctgaaactcagctag

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