Oncorhynchus tshawytscha (Chinook salmon): 112258601
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Entry
112258601 CDS
T05605
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112258601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112258601
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112258601
Complex C
U5 SnRNP specific factors
112258601
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
112258601
NCBI-ProteinID:
XP_024288848
LinkDB
All DBs
Position
LG09:complement(72264554..72282630)
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AA seq
970 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDDDLETDDRDADEADEDEDDEPADADEDVPGMEVVLHED
KKYYPTAEEVYGPEVETLVQEEDAQPLTEPIIKPVRNKQFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSFLFNIMDTPGHVNFSDEVTSGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNAMLSTYSTDENLVVSP
LLGNVCFASSQYCVCFTLGSFAKIYSDTYGDINYTEFAKRLWGDIYFNPKTRRFTKKAPT
SNSQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLVKEELKLNIRPLLRLVCKR
FFGEFTGFVDMCVQHIPSPQGGAKNKIEHSYTGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWINVARYQIEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIIQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctgtatgacgagtttgggaactacattggtccagaactagactctgac
gaggatgatgatctggagacggatgacagagatgcggatgaggctgatgaggatgaggat
gatgagccggctgatgctgatgaagatgtcccaggaatggaggtagttctgcacgaggat
aagaaatactatcctacagcagaggaagtgtacgggccggaggtggaaactttagtccag
gaagaggacgcacagcccctcacagaacccatcatcaagcctgtaaggaacaagcagttc
actctgatggaacaggagctaccttccactgtttatgacatggagttcctggctgaccta
atggacagtcccgagctgatccgtaacgtcaccctgtgtggccacctgcaccacggcaag
acgtgtttcgtggactgcctgattgaacagacacacccagagatcaggaagagagatgac
atggatctccgttacacagatatcctgttcactgaacaggagcgaggggttggtatcaag
agcacccctgtcacaatggttcttccagactccagaggcaaatccttcctcttcaacatc
atggacacaccaggccacgtcaacttttcggatgaggtgacatcaggcatccgactctcc
gacggcatcgtgcttttcatcgacgcagcagaaggggtgatgttaaacacagagcgtctg
atcaagcacgcagtccaggagcgtctggccatcaccatctgcatcaataaggtggaccgc
ctcatcgtggagcttaagctgccccctacagacgcctactacaaactacgccacatagtg
gacgaggtcaacgccatgctcagcacctactctacagacgagaacctggtggtgtctcct
ctcctggggaacgtgtgtttcgccagctctcagtactgtgtttgcttcaccttgggctcc
ttcgccaagatctactccgacacctacggtgacatcaactacacagagtttgccaagagg
ctgtggggagacatttatttcaaccccaaaacgcgcaggttcactaagaaagcccccacc
agtaactcccagcgtagctttgtggagtttgtgttggagcctctgtacaagatcctatct
caggtggtgggtgactgtgacacgtctctgcctcgggtgctggatgagttggggatccac
ctggtcaaagaggagctgaagctcaacatcagacctctactcaggctggtctgtaagcgc
ttcttcggagagttcactggctttgtggacatgtgcgtgcagcacatcccctcaccacag
gggggtgccaagaataagatagagcacagctacactggaggactggactcagacctgggg
gaggccatggcagaatgcgaccctgatggtcctctgatgtgccacaccactaagatgtac
agtactgaggacggggtgcagttccacgcgttcggccgggtgctgagcggtaccatccag
gcgggccagccagtcaaggtgctgggtgagaactacactctggaggacgaggaggactcg
caggtctgcacggtgggacgcctctggatcaacgtcgccaggtaccagatagaggtgaac
cgtgtgcctgctggcaactgggttctcattgagggctgtgaccagcccatcgtcaagaca
gccaccatcaccgagcccagagggaacgaggaagcccagatcttccggccgctcaagttc
aacactgcgtctgtcatcaagatcgctgtggaaccagtcaacccgtcagagctgcccaag
atgttggacggactgcggaaggtcaataagagctacccatccctcaccaccaaggtggag
gagtcaggggaacacgttatcctgggtactggggaactctacctggactgtgtcatgcat
gacctgcggaagatgtactctgagatcgacatcaaggtggctgaccccgtggtgaccttc
tgtgagactgtagtggagacgtcgtctctcaagtgctttgccgagacaccgaacaagaag
aataagatcaccatgattgccgagcctctggagaagggcctggctgaggacatagagaac
gaggtggtgcagatcacatggaacagaaagaagctgggagagtttttccagaccaagtat
gactgggatctgctggctgccaggtctatctgggcctttgggcccgacaccaccgggcct
aacatcctggtagatgacaccctgccttctgaggtggacaaggctctgctgggctcggtt
aaggacagcatcatccagggcttccagtggggcaccagggaggggcctctgtgtgacgaa
cctatcagaaacgtgaagtttaagatcctggatgcggtcatagcgcaggagcctctacac
agaggaggaggacaggtcatccccacagccaggagagtggtgtactctgccttcctcatg
gccacccccaggttgatggagccctattactttgtcgaggtccaggccccagctgactgt
gtgtctgctgtgtacacagtactggccagacggagaggtcatgtgacccaggacgccccc
atccccgggtctcccctctacaccatcaaggccttcatcccagccatcgactcgtttggc
tttgagactgacctgagaacacacacacagggccaggccttctccctgtccgtcttccac
cactggcagattgtccctggtgaccctctggacaagagcattgtgatcaggccgctggag
ccccagcctgcccctcacctggcaagagagttcatgatcaagacacgccggcgcaagggt
ctgagtgaggatgtgagcatcagcaagttctttgatgaccctatgttgttggagctggcc
aagcaggacgtggtgctcaactaccccatgtga
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