Oncorhynchus tshawytscha (Chinook salmon): 112259205
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Entry
112259205 CDS
T05605
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase radical fringe
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw00514
Other types of O-glycan biosynthesis
otw04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
112259205
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
112259205
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
otw01003
]
112259205
Enzymes [BR:
otw01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
112259205
Glycosyltransferases [BR:
otw01003
]
Glycan extension
O-Glycan
112259205
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fringe
Motif
Other DBs
NCBI-GeneID:
112259205
NCBI-ProteinID:
XP_024289716
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Position
LG27:complement(1849150..1877548)
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AA seq
408 aa
AA seq
DB search
MHVSSMGASKLCFLFSLALCALLLLIPTLQPSQHQGDLPRPRAHNKPARHPGRLVVPLQA
DMGKVTVGRNGIDGDSMGQSTPRETKRTVDGDWVYTARRADTQGAGKHIDSQTGSEGDFL
HRTGGVMGAGGSWPRNPLELKDIFIAVKTTRKYHKSRLDLLFQTWVSKAKEQTFIFTDGE
DQELRRRAGANVINTNCSAAHTRQALCCKMSVEYDKFIESQRKWFCHMDDDNYVIVPSLL
KLLSSYHHTQDVYLGRPSLDHPIEAAERVKSDGSVSVKFWFATGGAGFCISRGLALKMSP
WASLGNFISTAEKIRLPDDCTMGYIIEALLEVTLTHTHLFHSHLENLQRLPTDTVLEQVT
LSYGGFENRRNVISIGGAFSLVEDPSRFKTVHCLLYPETDWCPSMGHH
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtctcctcaatgggtgccagcaagctctgcttcctgttctccctggctctctgt
gccctgttgctcctcatccccaccctccagccctcacagcatcaaggggaccttccccgg
ccccgggcccacaacaagcctgcccggcaccctggacgtctggtggttcctctccaggca
gatatggggaaagtgacagtggggcgtaatgggattgatggtgactctatggggcagagt
acaccaagagagaccaagaggactgtggatggggactgggtgtatacagctcgtcgagct
gacacccagggcgctgggaagcatatagactctcagacagggtcagagggggacttcctc
cacagaactgggggtgtgatgggggctggagggtcttggcccaggaaccctctggagctg
aaagacattttcatagcggtgaagaccaccaggaagtaccacaagtccagattggatctg
ctgttccagacctgggtgtccaaagccaaagaacagacctttatattcacagatggggag
gatcaggagctgaggaggagagcaggggctaacgtcatcaacaccaactgttcagcagca
cacacgcggcaggccctgtgctgtaagatgtctgtggaatacgacaagttcatcgagtca
cagaggaagtggttctgccatatggatgatgataactatgtgattgtacccagtctgctg
aagctgctgtcctcctaccaccacacgcaggatgtttatctgggccggcccagcctcgac
caccccatagaggccgcagagagggtcaagagtgacggatctgtgtcagtgaagttctgg
tttgctacaggaggagcagggttctgtatcagtcgtggtctggccctcaagatgagtcca
tgggctagtctgggcaacttcatcagcacggcggagaagatccgtctccctgacgactgc
accatgggttacatcatcgaggcgctgctggaggtgacactgacacacacacacctcttc
cactcccacctggagaacctgcagaggcttcccacagacaccgtgctggagcaggtcact
ttgagctacgggggttttgagaacaggaggaatgtgatcagcattggaggagccttctct
ctggtggaggacccatcacggtttaagactgtccactgcctcctctacccagagactgac
tggtgtcctagtatgggtcaccattga
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