Oncorhynchus tshawytscha (Chinook salmon): 112259940
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Entry
112259940 CDS
T05605
Name
(RefSeq) nectin-4 isoform X1
KO
K06593
poliovirus receptor-related 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
otw04517
IgSF CAM signaling
otw04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
112259940
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112259940
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
112259940
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112259940
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
Nectin family
112259940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
V-set
I-set
ig
Ig_2
C2-set_2
TMEM154
Protocadherin
Tcell_CD4_C
DUF7237
EphA2_TM
LST1
DUF5305
EzrA
Motif
Other DBs
NCBI-GeneID:
112259940
NCBI-ProteinID:
XP_024290405
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All DBs
Position
LG10:21633161..21659200
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AA seq
630 aa
AA seq
DB search
MTSHLGGLTPLLWILWSFIAVVQGDFVEPSPSYTLNSLAEAETRLPCQFKVEVGQVVVQV
TWTKEKADGTKDQIITVHHTDGHTEFGQYSGRVRFSSRKPTVDSSLIIMNTVESDEGMYN
CHISTFPSGNFERQLSLTVWTTPISSLDPVILVEGQSFQLAASCRSVARPPPHLSWDTEL
PGQSHNRSLEGGSVSTHFSLHPLRSMDGKRLDCLVKHPALKGPRRITNNLVVHYPPNSEI
SGFDQNWYAGLEEAALSCVSGGNPKPQSFNWTRKGGDLPEGVTTGNGSLLFNRPLVLTDA
GIYQCVAMNSVGADNAEVEITVTELPQKQASFDSLLMVIVGGVAGVLLLVMIIIVISVTR
HHKRKNKKLSRELTVRKEEISTLSRQASFRKMNSVSMDTRGQTEEDIPLRVEGTLRTSLS
SVVEQGRIRESRSTLVGSGGLDYLGRPVLYNSSRRGRESRAMDREEENRLRVESNEQNST
MSLSNHLHPPLQPSPFPMEQSVELLRSLTSSAIIPMEWGLHIRQGPGSRNTHSPLSCNNP
PITDDEDEDEGVEGEWETCPRMSPLDQGKSEDQDSKTNSSQISEVEFGLNPHFQQNNGTL
RPKPLPKYQPNGILLTSSPHASFIHKAQIV
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacctctcacctgggcggactgacaccactgctgtggatcctttggagtttcatcgct
gtggtgcagggggactttgtggagccctctccctcgtacaccttgaactccctggctgag
gctgagacccggctgccctgccagttcaaggtggaagtgggccaggtggtggttcaggtc
acctggaccaaggagaaagcagatggcaccaaggaccagatcatcacagtacaccacacc
gacggacacacagagtttggtcagtactcagggcgtgtgcggttcagcagcaggaaaccc
actgtggactcatccctgatcatcatgaacaccgttgagtcagatgagggcatgtacaac
tgtcacatcagcaccttcccctcggggaacttcgaacgacagctgtcactcaccgtgtgg
accacgcccatctcctccctggaccctgtgatccttgtcgaaggccagtccttccaattg
gctgcatcctgccgctctgtggcccgccctccgccccacctctcctgggacacagaacta
ccaggccaatcacacaacaggagtttggagggtggttcagtctccacccacttctctctg
catcccctgaggagtatggatgggaagaggctggactgtctggtgaagcatccggctctg
aagggaccacgcagaatcaccaacaacctggtggtgcactatcctcccaattcagagatc
tctgggtttgatcagaactggtatgctggtctggaggaagctgccctcagttgtgtcagt
ggaggaaaccccaaaccacagagtttcaattggaccagaaagggtggagacttaccagag
ggcgtgaccacagggaatggatccttgctgtttaatcggcccctcgtcctgacggacgct
ggcatctaccaatgtgtggccatgaactctgtgggggcggataacgcagaggtggagatc
actgtgacagagttgcctcagaagcaggcgtcgtttgacagtctcctgatggtaatagtg
ggaggagtggccggagtactgcttctagtcatgatcatcatagtcatctctgtgacccgt
caccacaaacgcaagaacaagaaactgtcgagggaactcactgtgaggaaggaggagatc
agtactctctccagacaggcatctttcaggaaaatgaactcagtcagcatggacactaga
ggacagacagaggaggatatccctctcagagtggaggggacactgcggaccagtctgtcc
tctgtagtggagcaagggcgcattagggagagtcgatctactctggtagggagcgggggg
ctagactacctgggtcgacctgttctgtacaattcttcacgaagagggagggagagcaga
gccatggacagagaggaggagaacagacttagggtggagtcaaatgagcagaacagcacc
atgtctttgtcaaaccatctccacccccctctccaaccctctcccttccccatggaacag
tccgtcgagctgctgaggtccctgaccagcagtgccatcatcccaatggagtggggttta
catatacgacaggggcccggtagcaggaacacccactcccctctcagttgcaacaatcct
cccatcacagacgacgaagatgaggatgaaggtgtggagggggagtgggaaacgtgcccc
aggatgagtccgttggatcaggggaagtcagaagaccaggacagcaagaccaacagttct
cagatctcagaagtagaatttggactcaaccctcacttccagcagaacaatggaacattg
agacccaaaccgctccccaaataccagcccaatggcatcctcctcacctcatcaccacac
gcctccttcatccacaaggcccagattgtatag
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