KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112262401
Entry
112262401         CDS       T05605                                 
Name
(RefSeq) lysine-specific demethylase 2A-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    112262401
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:otw03000]
    112262401
   04121 Ubiquitin system [BR:otw04121]
    112262401
   03036 Chromosome and associated proteins [BR:otw03036]
    112262401
Enzymes [BR:otw01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     112262401
Transcription factors [BR:otw03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    112262401
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     112262401
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    112262401
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     112262401
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like JmjC F-box Cupin_8 LRR_4 Roughex
Other DBs
NCBI-GeneID: 112262401
NCBI-ProteinID: XP_042185667
UniProt: A0AAZ3Q3T5
LinkDB
Position
LG11:complement(7353353..7372664)
AA seq 1305 aa
MGGFAVATQDRGSYPENVSQQCKAPGVKTQQKPGSRLRRLARSTVLEQFYSIMVRSGTRR
RYHDDGISDDEIEGKRTFDLEEKLRSERFTSDRVKRMEGKDLTFEYIQRGGLRDPIIFEK
PDGLGIKMPDPDFSVNDVKIFVGSRRMIDVMDVSTQKGIEMSMAQWRRYYETPPSQRDKL
YNVISLEFSHTKLENLVQRPTSVDIIDWVDNMWPRHLKERQRDSTNSITDMQYPKVQKYC
LMSVQGCYTDFHIDFGGSSVWYHILRGGKVFWLIPPTPQNLELYEDWVLSGKQGDIFLGD
KAQDCQRIELKQGYTFMIPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLNIYSIEDRTRV
PAKFRYPFYYEMCWYVLERYLFSLTNTSYLTPDFQKHSLGIGLTRDPSTCESVNGHTQRE
DEEEAPPTRGSKPGVKVHLTPFELEGLWNLLGKLESLPSQKNCVPAGIHNAPALLHDIRA
LLKEHANDIPKLSYTGKPIVKWPTRPPWYQPPPPPPPVARPKLSATVVTPRPQKPASSMS
VLRRRRVRCKRCEACVRTECGDCNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSVVCEL
CGEGNQEGGEGPVFALTLMECSNCAQIAHPACLKVTGEGVVNTDLPSCWECPKCVLGITD
TEVKGDKNKMLHAKRKSSSYLDGRIAKIYRRGGHSDDSGSDDDDDDDDEDDDDEGSRGGG
GGVGRKMSGPRPRGSGSASRRGYGTGRRGIWRGSSHRGAGRGSGLAPHSSLKMRRGRGGL
GVGRGDRERGGRVRLRGGTRMQRRRDESEEDDNDDDDDDDEDDDSEEDPQHHHRHKDHRQ
RRRRRRTDDEEDDDEDDDEEDSSARDLEGEDEDVDDEDEDEEDDENQSDSEPEPPVLLVS
DLNDDFLNGSYLTVTLQRPPRAKRHPGSIVPKLEAAMSPRTHGGGPGYVQHKTLGKTRHK
NGTVAAGNGLAQPAKNPVGRPPRHRINNPHGDTADRERDTASPSSSDSSASPTPPPHSSH
SPSSLLSLPSFKDVGNEKGGEKEVWVAVFLYLSRAELASCMTVCKAWYKWSCDKRLWSGV
DVSRCPSLSSQALQGIIKRQPTSLDLSWTPVSKKQITLLIHRLPGLKELMIAGCSWSSMS
ALSTPSLPCLRTLDLRWAEGVKDTQIRDLVTPPGCDSRSRLRGCVVLRLAGLDISDSTLR
LILRHMPLLERLDLAHCGDLTDQSVCLLTAAGTHTRNTLTEINLSGCNKLTDGCLAYLKR
ASGLALLDLRGCKGVTRRGCEGFISDLSHCVLFCMTEEKLIQRIS
NT seq 3918 nt   +upstreamnt  +downstreamnt
atgggcggctttgctgtagcaacccaagacagaggtagctacccagaaaacgtgtctcag
caatgcaaagctccgggagtcaagacacagcagaagccaggaagcagactacgcagactg
gcccggtcgaccgtccttgaacagttctactcaatcatggtgcggtcgggcacgaggcgg
cgctaccatgacgatggtatctcggacgacgagatcgaggggaagaggacctttgacctg
gaggagaagttgaggagcgaaaggttcacctcagacagggtgaaacgcatggaggggaaa
gacctcacgtttgagtacatccaaagaggtgggttgagggacccgatcatctttgagaag
ccagacggactgggtatcaagatgccagatcctgacttcagtgtgaacgacgtcaagata
tttgttggcagcaggcgtatgatcgatgtgatggatgtgagcactcagaagggtatagag
atgtctatggcccagtggcgacgttactacgagacgcccccctcccagagggacaaactc
tacaacgtcatcagcctggagtttagccacaccaaactggagaacctggtccagaggcct
acatcggtggacatcatagactgggtggacaacatgtggcctcggcacctgaaggagaga
cagagagactccaccaactccatcacagacatgcagtaccccaaagtgcagaagtactgt
ctaatgagtgtgcagggctgctacacagacttccacattgacttcggaggttcctctgtc
tggtaccacatactgcggggaggcaaggtgttctggctgatcccgcccacgcctcagaac
ctggagctgtatgaggactgggtgttgtcagggaaacagggagacatcttcctgggagac
aaggcccaggactgtcagaggatagagctgaagcagggctataccttcatgatcccttca
ggttggatccatgcggtctacactccagtggacaccctggtgtttggggggaactttctc
cacagcttcaacatccccatgcaactcaacatctacagcattgaggacaggacacgggta
ccagctaagttccgttacccgttctactatgagatgtgttggtacgtgttggagagatac
ctcttcagtctgaccaacacttcctacctcacgcctgacttccagaaacattccctgggc
atcggtcttacgagagacccctccacctgtgagtccgtcaacggccacacccagagggag
gatgaagaggaggctcccccgacgcggggctctaagcccggggtgaaggttcacctgacg
ccctttgagctggaggggctgtggaacctgctgggaaagctggagtcgctgccctcacag
aagaactgtgtcccggcgggcatacacaatgctcccgcgctgctgcacgacatcagggcc
ctgctgaaggagcatgctaatgacatccccaaactgtcctacactgggaagcccatcgtc
aagtggcccactaggccgccgtggtaccagcctcctccccctcctcccccggtggctcgt
cccaagctgtctgccacggtggtgaccccgcgaccccagaagcccgcctcgtccatgtcc
gtgctgcggcggcggcgcgtgcggtgtaagcgctgcgaggcgtgcgtcaggacggagtgc
ggggactgtaacttctgcagggacatgaagaagttcggcgggccggggaaactcaaacag
acctgcgtgctccgacagtgtctggcgccgggtctgcccctgtcagtggtgtgtgagctc
tgtggagaggggaaccaggagggaggagaggggccagtcttcgccctcaccctcatggag
tgttccaactgtgcccagatagcccaccccgcctgcctcaaggtaacaggggagggtgtg
gtgaacacagatctgcccagctgctgggagtgtcccaaatgtgttctgggaatcaccgat
actgaggtgaaaggggacaagaataaaatgttacatgcgaaacgcaagtcttcttcgtat
ctcgacggccgcatagctaagatctaccgtcgcggtggtcacagcgatgactcgggcagt
gatgatgatgacgacgacgatgatgaggatgatgatgacgaaggctccaggggcggagga
ggcggcgtgggaaggaagatgtccggaccacgccctcgcggcagtggttccgcctctcga
agaggctacgggactgggaggcgaggcatttggagaggctcctcccacagaggggcaggc
cgtgggagcgggctggcccctcactcctccctgaagatgaggcgtggcagaggggggctg
ggggtggggcgaggggacagggagagaggcgggagagtgcgcctccggggaggcaccagg
atgcagagacgcagggatgagtcagaggaggacgacaacgatgatgatgatgacgacgat
gaagatgacgacagcgaggaagatccgcagcatcaccaccggcataaagatcaccggcaa
cgccgcaggcggaggagaacggacgacgaggaagacgacgatgaagacgatgatgaggaa
gacagctcggcccgggacctggagggggaggatgaggacgtggacgatgaagatgaggat
gaggaagacgacgagaaccagtcagactccgaaccagagcctcctgttctcctggtgtct
gaccttaacgacgacttcctaaatggctcgtacctgaccgtgaccctacagcgcccccca
agggctaaacgccaccccggctccatcgtacccaagctggaggccgccatgtctcccaga
acccacggcggcggtccaggttacgtccagcataaaaccctcgggaagacgcggcacaaa
aacggcacggtcgccgccggcaatggcctggcccagcccgccaagaatccagtcggccgg
ccgccgcgtcaccgtatcaacaatccccacggcgacacagcagacagggagagggacact
gcctctccttcctcctcagactcctcggcctcccccacccctcctccccactcctcccac
tctccttcctcgctcttgtcgctgccctctttcaaggatgtaggaaatgagaaaggaggg
gagaaggaggtgtgggtggcggtgttcctttacctgagcagagccgagctggctagctgt
atgactgtctgtaaggcctggtacaaatggagttgtgacaagcgtctctggagtggtgtg
gatgtatcgcgttgtccctcgctctcctcccaggccctgcagggcatcatcaaacgccag
cccacctccctggacctctcctggacccctgtttccaagaaacagatcaccctactcata
caccgcctgccaggtctgaaggagttgatgatagcaggttgctcctggtcgtccatgtca
gccctgtccacccccagcctgccgtgcctccgtaccctggacctgcgctgggcagagggg
gtcaaagacacccagatcagggacctggtcacaccaccaggctgtgacagtcggtctcgg
ctgcgtggctgtgtggtgctgcgtctagccggcctggacatcagtgactccaccctgagg
ctgattctccgtcacatgcccctgctagagcggctggacctggcccactgcggagacctc
acggaccagtccgtctgcctgctcaccgccgccggcacacacacgcgtaacacactcacg
gagatcaacctctcaggctgtaacaagctgacggacggctgtctggcgtacctgaagagg
gcgtctggcctggcgctgctggacctgcggggctgcaaaggtgtgacgcggcggggctgt
gagggcttcatctcggacctctctcactgcgtcctgttctgtatgacggaggagaaactc
atccagaggatatcataa

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