Oncorhynchus tshawytscha (Chinook salmon): 112263010
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Entry
112263010 CDS
T05605
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112263010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112263010
04121 Ubiquitin system [BR:
otw04121
]
112263010
03036 Chromosome and associated proteins [BR:
otw03036
]
112263010
Enzymes [BR:
otw01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
112263010
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
112263010
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
112263010
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
112263010
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
112263010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
Viral_cys_rich
Motif
Other DBs
NCBI-GeneID:
112263010
NCBI-ProteinID:
XP_024294722
LinkDB
All DBs
Position
LG12:34559687..34584239
Genome browser
AA seq
778 aa
AA seq
DB search
MALSLSADEEDYESESEQQHAANRPKPKMGTSAAVKLPSNRSASGARRRRTRCRKCEACL
RTECGDCHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEAGKEDSLEEEEDK
FNIMLMECSICSEIVHPNCLKVKDASGVVNDELPNCWECPKCNYAGKTGKVCKQKRGPGF
KYASNLPGSLLREQKVVKEEGESTSTSTVKRKPERDETPRHRPEEWESLHRQPPVLSPST
LPRPRPEDKLRKKRKLFDDDYEEDFDVRKKGKSDGHLFLNQIKTEEEEVDEEDKASLYRQ
GLERRGRLGDTEEEAEYEDDEDTKTSLPRPPLKTPVLDSDQSHCSSPWAGPSSEGGSEPQ
EKGPRPKACRKRRLPNKELSKELSKALNQEIQKTEDCLANENRQPLKVEPESENEEPKRS
FRNGSDLGGERPHLWTKEINCTPWELRHFYPGQITPLGFNRSSPGTRPLPPRSPPKCVQM
ERHVIRPPPISPPPDRLPLVDGKTHAVQREVWVKIFGHITHKELCVCMRVCKTWNRWCCD
KRLWTIIDLNRCKSITPLMLSGIIRRQPLSLDLSWTNISKKQLSWLINRLPGLRVLLLSG
CSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVMDL
RLAGLDITDASLRLIIRHMPVLSQLDLSYCNHANDQSVNLLTAAGTTTRDSLTEINLSVC
NRVTDHSLTFFKRCGSICRIDLRYCKQVTKTACEQFIAEMSVSVQFGLKEDKLLQKLG
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcactgagtgcagatgaagaggattatgaatcagaatctgaacagcagcat
gcagccaaccggccaaagcccaagatggggacgtcagcagcggtcaagctgccgtcgaat
cgcagtgcgtctggcgccagacgcaggagaacacgctgccgaaagtgtgaggcgtgcctc
cgaaccgagtgtggagactgtcacttctgtaaagacatgaagaagtttggaggacctggg
cgcatgaagcagtcctgtatcatgaggcagtgcattgcacctgtcctgccccacacggct
gtgtgtgtcgtgtgtggagaagcaggtaaggaggactccctggaggaagaggaggacaag
ttcaacatcatgctcatggagtgctccatctgcagtgagattgttcaccccaactgctta
aaggttaaagatgcctctggtgtggtgaatgatgaacttcccaactgttgggaatgtccc
aaatgcaactatgctgggaaaacaggaaaagtctgcaagcaaaaaaggggaccagggttc
aagtacgcgtccaacctccctggctctctgctgagggagcagaaggtggtcaaggaggag
ggtgagtccacctctacgtctacagtcaagaggaagcctgagagggatgagactcccaga
cacagacctgaggaatgggagtcccttcacagacaaccccctgtcctgtcccctagcacc
ctgcctcggcccagacctgaggacaaactgaggaaaaagaggaagctcttcgacgatgac
tatgaagaggactttgatgtgaggaagaagggaaagtcagatggacatctgttccttaat
cagatcaagactgaagaggaggaggtggatgaagaggataaggcctctctgtaccggcaa
ggcctggagaggagagggcgtttaggcgataccgaggaggaggcagagtacgaggatgac
gaggacacaaagacaagcctgcccaggcctcctctcaaaactcctgttctagacagtgac
cagtctcactgcagctctccatgggctggccccagtagtgaggggggcagtgaaccccag
gagaagggcccacgtcccaaagcgtgccgcaaacgccgattaccaaacaaagagctgagt
aaagagctgagcaaagcactgaaccaggagatccagaagaccgaggactgccttgccaat
gagaaccgccagcccctgaaggtggagccagagagtgagaatgaagagccaaagaggagc
ttccgcaatggcagtgacctaggaggggagcggccacacctctggaccaaggaaattaac
tgcactccctgggagctgcgccacttctaccccggccaaatcacccctctgggcttcaac
aggagctcccctggcacccggccgctgcccccacgctccccacccaagtgtgtccaaatg
gagcgccacgtcatccggcctccccccatcagccccccgccggatagattgcccctggtg
gacgggaaaacccacgcggtgcagcgagaggtctgggtgaagatcttcggacacatcaca
cacaaggagctgtgtgtctgcatgcgtgtctgcaagacatggaaccgatggtgttgtgat
aaaagactgtggaccataatcgatctgaaccgctgtaaatctatcactccccttatgctg
agtggcatcatccgcagacagcccctctcactggacctcagctggaccaacatctccaag
aagcaactaagctggcttataaaccgcttaccaggtctgcgggtgttgctgctctccggg
tgctcgtgggtggctgtgtctgccctctgcacctctagctgccctctgctgcgcaccctg
gatgtgcagtgggtggaggggctcaaagatgcccagatgagggacctgctctcgcctccg
accgacaacagaccaggtcagttggacaaccgttgtaagctgaggaacgttatggacttg
cgtctggccggactggacatcacagacgcctctctgcgtctgattatcagacatatgccg
gtactttcacaactggacctgagctactgcaaccacgccaacgaccagtcggtcaacctg
ctgacggccgcagggaccacaaccagggactccctcacagagatcaacctgtcagtttgt
aatagggtgacagaccattcccttaccttcttcaagcgctgtggaagcatctgtcgcatt
gacctacgctactgcaaacaggtgaccaagacggcctgtgaacagttcatagctgagatg
tctgtaagtgtacagtttggcctcaaagaggacaaattactgcagaaactcggctag
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