Oncorhynchus tshawytscha (Chinook salmon): 112263027
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Entry
112263027 CDS
T05605
Symbol
hps4
Name
(RefSeq) Hermansky-Pudlak syndrome 4 protein isoform X1
KO
K20194
Hermansky-Pudlak syndrome 4 protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112263027 (hps4)
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Others
BLOC-3 complex
112263027 (hps4)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Intu_longin_1
Intu_longin_3
Motif
Other DBs
NCBI-GeneID:
112263027
NCBI-ProteinID:
XP_024294753
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Position
LG12:34882571..34892607
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AA seq
651 aa
AA seq
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MAAMAEIIVPDSRRCINFFLYDGSKVKGEGDPTRAGICYFYPEETPLDKQELLCGQLAGV
SRCVSELSSSPVRLLRLRRSKFAIRMKDNFLWALSCSVEIPDVSICDFLDQLINLFSFYN
GPIRQSYQIYSQEDLAVRWTQYLSHLQGGATELHHIFSVLSTIDSTHIDPLLLLKAALIL
QACQRCPLVLAGCVLYCGRVVSTQMPPDLTVKVMVHEMETYKQEQRPNGLSSSSSSGSTP
LSSPVTSTTVFLTTTELQYLRSAPVDRESRSKSTQSTPKESNRPRKSRLLSRTLSDTPTT
DPLDPDPTHYVPLSFHYPSTPQSTIPDESLFSPSPSFHTPGPLSPSPIKVAPETSGHNLS
NGKLYHEVEEGVTGSSYDHSYNSIDGGRDESGLAEGGRSMQNKDLRHINGQNGGSIVLSG
ERAGALWFSGQESPEPGSQRMGNVKVFKEKEGQGSKGLLQADTCDVPPYSPSPGENSTEA
PLLPMSLYQHRVRGLVLALLVEPDFHSNTVATEEVYHSSLASLNGLEAHLRTTALGAPGP
HGPYTFAHFDCIQNTLTTNLSGRPGGAQECSFVRATSLLHSHFSHTEALQEAIVRSAGAA
VYGTRSVAQETYFLQKGGAVRNSGIPNHQDSAFSLPSKARHRLMKHGVNLL
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcagctatggctgagatcattgtgcctgactcaagaagatgcattaacttcttcctg
tatgatgggtcaaaggtcaagggtgagggtgaccctacaagagctggcatctgctacttc
tatcctgaagagacacctctggataagcaggagctgctgtgtggacagctggcaggcgtg
agccgctgtgtctctgagctctcctcctcccctgtacgtctgctcaggctacggcggagc
aagttcgccatccgcatgaaagacaactttttgtgggccttaagctgttcagtggaaata
ccagacgtcagtatatgtgacttcctggatcagctgataaatctctttagtttctataac
ggccctatccgccagagctaccagatctacagtcaggaagatttagctgttcgatggacc
cagtacctctcccacttacaaggaggtgccactgaactccaccacatcttcagtgtcttg
agcaccattgactctacacatattgacccacttctcctactcaaggctgccctcattctg
caggcctgtcaacgctgcccccttgtgttagctggttgtgtactctactgtgggagggtt
gtcagcacacagatgcctcctgatctcacagtgaaagtcatggttcatgaaatggaaaca
tacaagcaggaacagagacccaatggactgagttcctccagctcttctggcagcactcct
ctatctagcccagtgacctccaccactgtgttcctgaccaccactgaactacagtatctc
cgctccgctcccgtggacagagaatccagatccaaatctacccaatctactccaaaggaa
tcaaaccgacctaggaagtcccgcctgctgtcaagaactctatctgacacaccaaccact
gatccgcttgacccagaccccacccactacgtgccactatccttccattatccctccact
ccccagtcaactatacctgatgagtcgctatttagcccaagtccttcatttcacactcct
ggccctctcagcccttcacctatcaaggtcgctccagagacctctggtcataacttgtcc
aatggaaagctgtaccatgaggtggaggagggtgtcacaggaagttcgtacgaccacagt
tataacagcatagatggtgggagagatgaatcgggtcttgcagaaggaggcaggtcaatg
caaaacaaggacctgcgtcacatcaatggacagaatggaggtagtattgtactgagtgga
gagagagctggagccctctggttcagtggtcaggagtccccagagcctggcagtcagagg
atggggaatgtgaaggtgtttaaggagaaggaaggacaggggagtaaaggtttactgcag
gctgatacttgtgatgtgcccccctactccccttcgcccggtgagaactctacagaggcc
cctctgctccccatgtcgttgtaccagcacagggtgagagggctggtactggccctactg
gtggagccagacttccacagcaacactgtagccacggaggaagtgtatcacagcagcctg
gcatctttgaacggactggaggcacatctgaggaccactgctctgggggctcccggccca
catgggccgtacacctttgcacactttgactgtatacagaacacgctcacaaccaacctg
tctggcaggccagggggagcccaggagtgttcctttgtgagagccacatcgctgctccac
tcgcatttctctcacactgaagctctgcaggaggctattgtcaggagcgctggtgcagct
gtgtacgggacccgcagcgtggcccaggagacgtacttcctgcagaaaggcggcgcagtg
agaaactctggcattcctaaccaccaggacagcgctttctctctgcccagcaaggcccga
cacagattaatgaaacacggggtaaacctgctctga
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