Oncorhynchus tshawytscha (Chinook salmon): 112267642
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Entry
112267642 CDS
T05605
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1 isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112267642
09142 Cell motility
04810 Regulation of actin cytoskeleton
112267642
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112267642
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
112267642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
112267642
NCBI-ProteinID:
XP_042153653
LinkDB
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Position
LG14:56880449..57011225
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AA seq
1815 aa
AA seq
DB search
MGNVESQNGDHAFYGTQHGHLSRKHMSRSLRVSNKHHQSQSSSGSTRRSRDCHASQGKVD
HRNSETSTRSSSTPSIPQSLVDHALEPFNQTNVLSDYSSPIWVDRVAMNLRPVSCHTHLD
NPSETLHQDAESPGTRPHEPQGLQDRGLGLYSNTGEATYLQKTRDGPREPREVVSFKKKR
SKSADMWREDDSLDFSLSDLSQEHLTRLEKSDLSREHLTRLEKSDLSREHLTRLEKSDLS
REHLTRLEKSDHSREHLTRLEKSDLSREHLTRLEKSDLSREHLTRLEKSDLSREHLTRLE
KSDLSREHLTRLEKSDHSREHLTRLEKSDLSREHLTRLEKSDLSREHLTRLEKSDHSREH
LTSTEEIIDTEEVEDFPDCDGLLGLVSPEGLESLGAAGRANSLDQLYGGQKTPTRRPAGR
YAKWHHDANRSAREGDKMVSPEEEDDGNSYGAYTLPCRRSHCLSEGLTNPRAATCATMQG
RRAQTIQDVTAGEGSEYEDSGIDGVTASGAEHQSRRCKTMSMSFSVCSAAGRSLFAGSDS
GSSSGGGASEGVQGVYENFRQELEMSSCQTESLEEAGSALSDEQSTMSSAYQSDPLHGVV
QGTVRKAGRLAVKNFLVHKKSKKVESATRRKWKSYWVCLKGCTLFFYETDGRSGIDHNSV
PKHAAWAENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTCSQTELENWITAIHSACAAAV
ARQHHREDTVRLLRAEIKKLEQKIDMDEKMKKMGDMQLSAVTDTKKRKTILDQIFLWEQN
LEQFHMGLFRFRCYLASLQGGELPNPKRLLAFASRPTKLAMGRLGIFSVSSFHALVAART
ESGGRRRTQAMSRTSSSKRKSRFSSLWGLDTTSKRKTTVHPTINQVFVDGEEPVKKPLDG
IYDVDTARERGKSHEGKSLPQVNSDSHMTDSDIWVPDHLTPSWVCLPNDQPVLAIIQPGE
SALYALETICKAHQLDSTKHYLRLKFLKDNQIQFYIPKPDEQLCDLLYKEIELGSKITKV
IQFDRDESYMIGYGFSISVVEEDLVQQLYITDVKAGGLAFARGLNAGDEILQLNGKDSCR
LKFGDMKGAFSQASLSLTVNTLPSTDRRQICYLPPRRSDAQEVLHTDIFSVNQEEILDDG
VGLMLDSSGDSLDDDSEIFSEADQCRKSTEQVAAFCRSLHDMNPSECATTSSSPSLDSPF
RPPATGTASRQLSDADKLRKVICELVETERTYVKDLNCLIGRYLTPLQKETCLTQDELDI
LVGNLPEMVEFQVEFLKTLEDGTRLVPDLEKLERVDQFKKILFSLGGSFLYYADRFKIYS
AFCASHTKVPKVLVKAKTDADFKAFLEERNPKQQHSSTLESYLIKPIQRVLKYPLLLREL
YSLTDPDSEEHYHLNVAMKAMNKVASHINEMQKIHEEFGLVFDQLIAEQSGDKKEVADLS
MGDLLLHTSVAWINPPSSLGKWKKEPQLAAFIFRTAVVFVCKDGSKQKKKMGGSHRASSV
SSEDKDPFRFRHMISTDTLQVRALNNQDGEGSAVCEIVHVKSESEGRPERTFHLCCSSVD
SKKDFLKTVHSILRDKQRRQLMKTESLPPNQQYVPFGGKRLCALKGARPAMNRAASDPAR
TLGRRKLVRNRFTIDTDIVFDGEPDQESPLSPLSSEEPDGQGQREGQGKERGEVQAGDTD
RWVEEQIDLECYEAQQEKEVKGGGNVKEMEILSGDDDFCLSVRGPSTDSLSNTDLDGPIG
ALSLGEEGQERGSKHPQPQGAMGTTTPGMRLSRLGKQRGLAGMSVDDQGAGEEGEDIWLR
RENCPPDSGGQTLQS
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacgtggagagccagaacggcgatcacgccttctacggcacccaacatggccac
ctgtcccgtaagcacatgtctcgatctctccgcgtctccaacaagcaccatcagtcccag
tccagttctggttccacccgccgctcccgtgactgtcacgcctcgcaaggcaaagtggat
caccgaaactctgagacctccacgcgttccagcagcacccctagtatcccacagtcctta
gtggatcacgccctggagcccttcaaccagaccaatgtcctgtcagactactcctctccg
atctgggtggaccgcgtggccatgaacctccggcccgtctcctgccatacccacctagac
aacccatctgaaacgctccatcaagacgcagagtcacctgggactagaccccacgaaccc
cagggtctacaggacagaggactgggcctatacagtaacacaggggaggcgacctacctt
cagaagactagagacggacctagggaacctcgagaggtggtcagcttcaagaagaagaga
tccaaatcagccgacatgtggagagaagacgacagcctggacttcagtctgtcagacctc
agccaggaacatctcaccaggttagagaagtcagacctcagccgggaacacctcaccagg
ttagagaagtcagacctcagccgggaacacctcaccaggttagagaagtcagacctcagc
cgggaacacctcaccaggttagagaagtcagaccacagccgggaacacctcaccaggtta
gagaagtcagacctcagccgggaacacctcaccaggttagagaagtcagacctcagccgg
gaacacctcaccaggttagagaagtcagacctcagccgggaacacctcaccaggttagag
aagtcagacctcagccgggaacacctcaccaggttagagaagtcagaccacagccgggaa
cacctcaccaggttagagaagtcagacctcagccgggaacacctcaccaggttagagaag
tcagacctcagccgggaacacctcaccaggttagagaagtcagaccacagccgggaacac
ctcaccagcacagaggagatcatcgacacggaggaggtagaagacttccctgattgtgac
ggcctgctggggctcgtgtcccctgagggtctggagagtctgggcgcagcaggccgagcc
aactccctggaccagctctacgggggtcagaagaccccgactcgccgacccgctggacgc
tacgctaagtggcaccatgacgctaaccgctccgcccgggagggtgataagatggtgtct
ccggaagaggaggatgatgggaactcgtacggagcgtatactctgccctgccgacgctca
cactgcctgtctgaggggctaaccaatccccgggctgccacctgcgccaccatgcaggga
cgcagggcacagaccatacaggatgtgacagccggagagggcagtgagtacgaggacagt
ggcatagacggggtgacggcttcgggggcggagcatcagtcccggcgctgtaagaccatg
tctatgtccttctccgtgtgctcggcggcggggcggagcctgttcgctggcagtgacagc
ggaagcagcagcgggggaggagccagtgagggggtccagggggtctatgagaacttcaga
caggagttggagatgagctcatgtcagacagagagtctggaggaggcggggtcagccctg
agtgacgagcagagcaccatgagttcagcctaccaatcagatcccctgcacggcgttgtc
cagggaaccgtgcggaaggcgggccggctggccgtcaagaacttcctggttcacaagaaa
agcaagaaggtggagtcggccaccaggaggaagtggaagagctactgggtctgcctcaaa
ggatgcactctgttcttctacgagacggacggacggtcggggatcgaccacaacagtgtc
cctaaacatgcggcgtgggctgagaacagtatcgtccaggccgtccctgaacaccccaag
aaggactttgtcttctgcctcagcaactctctaggagatgcttttctcttccagacgtgc
agtcagacggagctggagaactggatcacggccatccactcggcgtgcgcggcggccgtt
gccaggcagcatcaccgggaggacacggtgcgtctgttgagggcggagatcaagaagctg
gagcagaagatcgacatggacgagaagatgaagaagatgggagacatgcagctcagtgcc
gtgaccgataccaagaagaggaagaccatactggaccagatctttctgtgggagcagaac
ttggaacagtttcatatgggtttgttccggttccgatgttacctggccagtctgcaagga
ggggagctgcccaaccccaaacgcctgcttgccttcgcctccagacccactaaactggcc
atgggacgcctcggaatcttctctgtgtcgtcctttcatgctctggtggcagcccgtaca
gagagcggggggaggagacgtacccaggccatgtcacgtacctcctcatccaaacgtaag
agcaggttctcctctctgtggggcctggacactacttctaagaggaagaccacagtccac
cccaccatcaaccaggtctttgttgatggggaggagccagtgaaaaagcctttggacggg
atctatgatgtggacactgccagggagagagggaagagtcatgaggggaagagtcttcct
caggtcaactcagacagtcacatgacagacagtgatatctgggtgcctgaccacctgacc
ccgtcctgggtgtgtcttcctaacgaccagcctgtcctcgccatcatccagcctggagag
tctgctctgtacgcgctggagaccatctgcaaggcccaccagctggattccaccaaacat
tacctgcgtctcaagttcctcaaggataaccaaatccaattctacatccctaaacctgac
gagcagctgtgtgacttgctttacaaagagatagagctgggctccaaaataaccaaagtc
atccagttcgacagggatgagtcctatatgattggctacgggttttccatctcagtggta
gaggaggatttggtgcagcagctctacataaccgatgtaaaggcgggaggattggccttc
gctagaggtctgaatgcgggcgatgagatcttgcagctgaatgggaaagactcatgcaga
ttgaagttcggggacatgaagggggcgttttcccaggcctctctgtccctgaccgtcaac
actctgccctctacggaccgacgacagatctgttatctgcccccccgacgctctgacgca
caggaagtcctccacacagacatcttctctgtgaaccaggaggagattctggatgacggg
gttggcctgatgctcgatagttctggagacagcctggatgacgactctgagatcttcagc
gaggcagaccaatgcagaaagagtacagagcaggtcgcagcattctgccgcagtctccat
gatatgaatccgtctgagtgtgccacgacctcctcatcccccagcctggactcgcccttc
cgtccccctgccaccggcaccgccagccgccagctctccgacgccgacaagctacggaaa
gtaatctgtgagctggtggagacggaacgcacctatgtcaaagatctcaattgtctcatc
gggaggtacttaaccccgctgcagaaggagacgtgcctcactcaagatgagctggacatt
ctggttgggaacctgcctgagatggtggagttccaggtggaattcctgaagactctagaa
gacgggaccagattggtcccagacctggagaagctggagagagtggaccagttcaagaaa
atcctcttctctctaggaggttccttcctgtactatgcagatcggtttaagatctacagt
gcgttctgcgccagccacaccaaagtccctaaggtgctcgtaaaggctaagaccgatgca
gacttcaaggcgtttctggaagagaggaacccgaaacagcaacactcctcaaccctggag
tcctacctgatcaaacccattcagagagttcttaagtacccactactactgagagagctg
tactcactgacggaccctgatagtgaagaacactatcacctgaatgttgctatgaaggcc
atgaacaaggtggccagtcacatcaatgagatgcagaagatccacgaggagtttgggttg
gtgtttgaccagctcatagcggagcagagtggagacaagaaagaggttgctgatctgtcg
atgggtgacttgctgctccacaccagcgtagcctggatcaaccctccctcctccctgggc
aaatggaagaaagaaccccaactggctgctttcatcttcagaacagccgtggtgtttgtg
tgtaaggatggatccaagcagaagaagaaaatgggtggctcccatcgagcgtcgtcagtc
tcgtctgaagacaaggacccattccgcttccgtcacatgatctccacagacacgctccaa
gtccgagccctcaataaccaagacggagagggctctgccgtgtgtgagatcgtccacgtc
aagtccgagtcagaaggacggccggagaggacattccacctgtgctgcagttctgtggac
agtaagaaggacttcctgaagacagtccactccatcttaagagataaacaacgacgtcaa
ctgatgaagacagagtctctaccccccaaccagcagtatgtccccttcggaggcaaacgc
ctctgtgccctgaagggagccaggcctgccatgaacagagcagcgtcagacccggcgagg
accctgggccggaggaaactggtgaggaaccgtttcactatcgacacagacatcgtcttc
gacggcgagccggaccaggagtcccctctgtctccactgtcttccgaagagcctgatgga
cagggacaaagggaaggacagggaaaggaacggggggaggtgcaggcaggggatacagac
cgctgggtggaggagcagattgacctggagtgctacgaggcgcagcaggagaaggaggtg
aaaggaggaggaaacgtgaaagaaatggagatccttagtggtgatgatgatttctgcctg
tctgtcagaggaccctccactgattcactgtccaacacagacctagatgggcctatcggg
gccctgtccctgggagaggaaggccaagagaggggctctaaacacccccagccccaggga
gccatggggaccaccaccccagggatgagactttcccgcctggggaagcagcgtggccta
gctgggatgagtgtggatgaccaaggggctggggaggaaggtgaggacatctggctacgc
agggagaactgtcccccggactcagggggtcagacactacagagctag
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integrated database retrieval system
