KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112267804
Entry
112267804         CDS       T05605                                 
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
  KO
K02084  apoptotic protease-activating factor
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04115  p53 signaling pathway
otw04210  Apoptosis
otw05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:otw00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    112267804
   04115 p53 signaling pathway
    112267804
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    112267804
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz APAF1_C Beta-prop_EML_2 NB-ARC Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 APAF-1-like_WHD Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st ANAPC4_WD40 WDR90_beta-prop_4th CARD Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_TEP1_C RMC1_N Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N eIF2A PEP5_VPS11_N Ge1_WD40 WD40_like Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_NUP159_NUP214 WD40_RFWD3 CARD_2 Beta-prop_WDR75_2nd AAA_16 WDR54 Beta-prop_WDR11_2nd NACHT AAA_22 MRP-L28
Other DBs
NCBI-GeneID: 112267804
NCBI-ProteinID: XP_042153812
UniProt: A0A8C8CD50
LinkDB
Position
LG15:1539503..1615780
AA seq 1459 aa
MSLFRATVKCLISIAKCNTKDTELALQAYKFTMNNKLSRITRQPAPICLVTVKCMLYLTL
SRVRETPPHWSFQTGGSCFCYNSGRTLLISKIGGDFCQNYIILKGNYYKLEHLSSVDSEL
LCRANRYISHHLPIHHHSSPATPPVWSDQVWPVGMAMMEEGARSCLLQSRSSLEQDIRAS
YLMDHMISDGVLTGDEEDRIRSKPTRREQAAALLELLLRKDNQAYISFYNALVRESYGDL
ASLLHNSLPLVSPEAEKSFSDGGTRYVQAVLSEGGVPQRPVVFVSRPALMNRVREKLYRL
QKEPGWVTVFGMAGSGKSVLAAEAVRDHALITECFPGGVHWLSIGQLDRSDLLVRIQSLC
FRLEQQSQEKDPSSSLHRPPGSLEEAKERLRFLMHRRYPRSLLILDDIWDSSVLKAFDIQ
CRVLLTTRDRSLADCVSGPKSEVAVESGLEEGQALEILALYVNRKPQRLPEQARSIVREC
KGSPLVVSLIGALLREFPDRWAYYLHTLQQKKFKRIRKSSSYDYDALDQAMAASIQVLSE
EHRELYIDLTVLEKDVKVPAKVLSVLWDLEPEEVEDVLQDFVNKSLLFRDCHHRPYLYYL
HDLQLDFLAEMNRSGLESLHTKVVRQYQQRYSKGPPTSGDEECLYWFRFLTYHMAKANLT
QELYSLMFSLDWVRTKAQIMGPAHLINDYLEYSTILDKENSEVRGHFQEFLSLNGHQLEQ
RPFPDVVQLALSQPDSSEVYRQALLQAQERATRGGLYLDWVNKSSLKSLSRLVVQPHQGS
IYSACFSHDGTKIASCGSSKTLRVFKSTSGEKLLEIQAHDDEVLCCAFSPDDHLLATCSS
DRKVKVWNVERGTLMRMFEDEHEEQVNHCQFTNTRRRLLLATCSNDKFMNTKLWNINKPS
SQNTMFGHLEPVNHCCFSPDDAYLSTSSSDGTLKLWEVSSANEWKSIDVADMFPEQREQT
EVMVKCSTWSAGGRTIICAARNAVFVFDVETAAMLLEIRTSRLSTVQYCHACPSSNLVAI
ALSHYAVELWDIETSKKMADCSGHLSWVHGVQFSPDGSLLLSCSDDQTIRVWETNKVHTS
SAVCLKRDSDVLFNNGDITVVAADNRNRLQVRNGRTGAVMFQSENQESRIRCTAICSQTS
AVGLGREDGTIQAGGKTVRQVLRTIGWRTLQRLTPHRGLLLALGLETGSVQVLEVPSGTS
LATLQGHTRAVLHCQFTPEGHTLITSSEDTTIRVWRWRTCECVVLEGHKEQVRCFSLLTT
TPSSETHLLSWSFDGTIKVWDMSSGERLQDLVCHQGAVLACDMSPDGQLFATTSADKTAK
VWSSASWECVRLLNGHQDCVRSCRFSWDGRRLATGDDNGEIRLWNVKDGTLLKICSRDNK
DAMDSLHGGWVTDLHFSPDNTVLLSTGGYIKWWNVEKGEALQTFYPTGANLKRIHVSPDF
STFVTIDNIGILYILKKVE
NT seq 4380 nt   +upstreamnt  +downstreamnt
atgagtctatttcgggccactgttaagtgtcttatcagtattgccaagtgcaataccaaa
gatactgagctagcactgcaggcctacaagtttacaatgaacaacaagctgtcacgtatc
accaggcagccagctcccatctgcctagttacagtcaagtgcatgctttatctcaccctc
tcacgtgtgcgcgaaacgccaccgcattggtcatttcagaccgggggaagttgtttttgt
tataattcaggaagaaccctactcatttcaaaaataggtggggatttttgtcagaattac
attattttgaaaggaaattattataaacttgagcacttatcgagtgtggatagcgagctc
ctgtgtcgagcaaatagatacatctcccatcacctgccaattcatcaccattccagccca
gccaccccacctgtgtggtcggaccaggtctggcccgttggcatggcgatgatggaggaa
ggggcgcggagctgcctgcttcagtcacgctccagcctggagcaggacatcagggcttcc
tacctgatggatcacatgatcagtgacggtgtgctgacgggggacgaggaggacaggatc
aggagcaagcccaccaggagagagcaggcggcggccctgctggagctgctcctgaggaag
gataaccaggcctacatctccttctacaatgccctggtccgcgagagctacggagacctg
gccagcctgctccacaacagcctgcccctggtctcccctgaggctgagaagagcttctca
gatggtggcacccgctatgtccaggcggtgctgagtgagggcggcgtgccccagagacct
gtggtgtttgtgagccggccagccctgatgaaccgggtcagggagaagctctaccgcttg
cagaaggagcccggctgggtcactgtgttcggcatggccggctccggcaagtctgtcttg
gctgcggaggcagtccgagaccacgcactcatcacagagtgttttccaggaggagtccac
tggctgtccataggccagctggaccggtctgacctgctggttaggatccagtcactgtgt
ttccgcctggagcagcagagccaggagaaagacccctcgtcctccctccaccggcctcct
ggctctctggaagaggccaaggagcgactacgcttcctcatgcaccgtcgttaccccagg
tcgttgctgatactggatgacatctgggacagctcggtgctcaaggcctttgacatacag
tgtcgagtactgctcaccacccgagacagaagcctagccgactgtgtcagcggtcctaag
tctgaggtggcagtggagagtggtctggaggagggtcaggccttggagatcctcgccctg
tatgtcaacaggaaaccccagagactcccagaacaggcccgcagcattgtccgagagtgc
aaaggctctcccttggtggtgtccctaatcggggccctgctgcgggagttcccggaccgc
tgggcctactacctgcacacgctccagcagaagaagttcaagcgtatccgtaagtcgtct
tcgtatgactacgatgcccttgaccaggccatggctgccagcatccaggtcctgtctgag
gaacacagggagctgtacattgacctcaccgtgctggagaaggacgtcaaagtacctgcc
aaggttctgtcagttctgtgggatctagaaccggaggaggtggaggacgttctccaggac
tttgtgaacaagtccctactgttccgtgattgtcaccaccggccctacctctactacctc
cacgacctccagctggacttcctggctgagatgaaccgctctggcctagagagcctccac
accaaggtggtgcgtcagtaccagcagcgctacagcaagggtccccccacctcaggagat
gaagagtgcctctactggttcagattcctcacctaccacatggccaaggccaacctcaca
caggagttgtactctctgatgttctctctggactgggtcagaactaaagctcagattatg
ggaccggctcatctcatcaatgactatttggagtacagcaccatactggacaaagagaac
agcgaggtgcggggccacttccaggagttcctgtctctgaacggccaccagttggagcag
cgtccgttccctgacgtagtgcagctggccctttcccagccagactcctctgaggtgtac
cgccaggccctgctgcaggcgcaggagagggccaccagagggggactctaccttgactgg
gtgaacaaaagtagtctgaagagcctgtctcgtctggtggtccagccccaccagggatcc
atctactctgcctgcttctcccacgacggcaccaagatcgcttcctgtggctccagcaag
acactgcgagtgtttaagagcacgtctggggagaagctgctggagatccaggctcacgac
gatgaggtgctctgctgcgccttctccccggatgaccatctcctagcaacctgctccagt
gataggaaggtcaaggtttggaatgtggagcgtgggactctgatgaggatgtttgaggac
gaacacgaggagcaggtcaaccactgtcagttcaccaacacacgccgacgcctcctactg
gccacctgttccaacgacaagttcatgaacaccaagctgtggaacatcaataaaccctct
tcccagaacaccatgtttggtcatttggagcctgtcaatcactgctgtttctcccctgat
gacgcctacctctccacctcttccagcgacggaaccctgaagctgtgggaggtgtcctcg
gctaatgagtggaagtccatagacgtggcggacatgttcccggagcagagagagcagacg
gaggtcatggtgaagtgcagcacctggtcagcaggcggcaggaccatcatctgtgctgcc
aggaacgcagtctttgtgtttgatgtagagacggcggccatgttgttggagatccggacc
agtcgtctgagcacggttcagtactgtcacgcctgccccagcagtaacctggtggccatc
gcactgtcacactatgctgtggagctgtgggacatagagaccagtaagaagatggctgac
tgtagtggtcatctgagctgggtccatggagtccagttctcccctgacggatctctactg
ctctcctgttctgacgaccagaccatcagggtgtgggagactaataaagtccacacctcc
tcggctgtctgtctgaagagggattctgacgtgctctttaacaacggtgacattactgtg
gtcgccgccgacaaccgcaacagactgcaggtgaggaatgggaggaccggagcggtgatg
ttccagtcagagaaccaggagtctcgtatccgctgcactgcgatctgctcacagacctca
gctgtggggctgggacgagaggatgggacgatacaggcaggagggaagacggttaggcag
gtactgaggaccattggatggaggactctacagcggctgacccctcacaggggcttgttg
ctggcgctagggctagaaacaggcagtgtgcaggtgttggaggtgccgtcggggacctct
ctagccactcttcagggtcacaccagggcagttctccactgccagttcaccccggaggga
cacacactcatcacctcctctgaggacaccaccatacgggtgtggaggtggaggacatgt
gagtgtgtggttctggagggccacaaggagcaggtcagatgcttctctctgctcaccacc
acaccctcctcagagacacatctcctcagctggtcatttgacggcaccatcaaggtgtgg
gacatgtctagtggtgaacggctgcaggacctagtgtgtcaccagggggcggtgctagcc
tgtgacatgtcgcctgacggacagctcttcgccaccacctctgctgacaagactgccaag
gtgtggagcagtgcatcgtgggagtgcgtgcgcctgttgaacggccaccaggactgtgtc
cgcagctgccgcttttcttgggacggccggcgcctagcaaccggcgacgacaacggagag
atacggctgtggaacgtgaaggatggtactctgcttaagatctgttcccgtgacaacaag
gacgccatggactctctgcacggaggctgggtgaccgacctgcacttctccccagacaac
actgtgctgctgtctacaggaggatacattaagtggtggaacgtggagaaaggagaggcc
ctccagaccttctacccgacaggagccaatctgaaaaggatccacgtgtcacctgacttc
tccaccttcgtcaccatcgacaatatcggaatcctctacatccttaagaaggtggaatga

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