Oligella ureolytica: I6G29_02390
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Entry
I6G29_02390 CDS
T07321
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oue
Oligella ureolytica
Pathway
oue03030
DNA replication
oue03410
Base excision repair
oue03420
Nucleotide excision repair
oue03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6G29_02390 (ligA)
03410 Base excision repair
I6G29_02390 (ligA)
03420 Nucleotide excision repair
I6G29_02390 (ligA)
03430 Mismatch repair
I6G29_02390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oue03032
]
I6G29_02390 (ligA)
03400 DNA repair and recombination proteins [BR:
oue03400
]
I6G29_02390 (ligA)
Enzymes [BR:
oue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6G29_02390 (ligA)
DNA replication proteins [BR:
oue03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6G29_02390 (ligA)
DNA repair and recombination proteins [BR:
oue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6G29_02390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6G29_02390 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6G29_02390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6G29_02390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QPT40477
UniProt:
A0A378XDE2
LinkDB
All DBs
Position
complement(443260..445341)
Genome browser
AA seq
693 aa
AA seq
DB search
MTNSDLQQELEQLYREITRHDYAYHTEDAPTISDAEYDGLVQRVLAIEAEHPQWIKPESP
SQRVGAAPLDAFETVQHAMPMLSLNNAFNNEEVVAFNRRVTDNLRAQNLLLAGGDIEYLA
ELKFDGLAVSLRYEEGRLVQAATRGDGTQGEDVTLNIRTIRSVPLTLNAEVVPAVFEVRG
EVLMHRDDFYKLNAEQEKRGIKAFVNPRNAAAGSLRQLDSNITRRRHLRFYAYGWGEVET
TEQLPTTQSAMMDKLKDFGFVISPEREVVKGTEGLLAFYQMIEAKRANLPFDIDGIVYKV
NSLHLQDALGFISRAPRFALAHKFAAEEMQTLLEGIEIQVGRTGALTPVARLKPVFVGGV
TVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVLAPVLELRPEGAVPFQMVTECPVC
ASAIERLPGEAVWRCTGGLFCRAQRVQSLIHAASRKALDIEGLGDKLAELLVEKEWVKSL
ADLYRLRAESISTLDRMGPKSSQNLINAIEKSKNVKLSNFIFSLGIRHVGEATARELAAH
FGSMAALSQATIEELLTLNDVGPAIAESIRHFFDEKHNQQVIHELAELGINPIHEGRSAS
PMVAGAGDSAINADVTAAVAGKTFVLTGTLPNWTRDEASDYLREAGAKVTGSVSKKTDYV
VAGEDAGSKLRRAEELGVTVLDEDALKALLGMS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgactaactccgatttacaacaagaattagagcaactttatcgtgaaattactcgtcat
gattatgcctaccatacggaagacgcaccaacaatctctgatgcagaatatgatggttta
gtccaacgcgtattggctattgaagcagagcacccccagtggattaagccggaatcccct
tcacagcgtgtcggtgctgccccccttgatgcctttgaaacagtgcaacatgccatgccg
atgctgtcgctgaataatgcatttaataacgaagaggttgttgccttcaatcgccgagtt
accgataatttacgtgcacagaatttgctgttggcaggtggcgacatagagtatttggct
gaactgaagtttgatggtttagcggtgagtttgcgttatgaagagggccgtttagtccaa
gcagctacccgtggtgatggtacccaaggtgaggatgtcacgcttaatattcgtacgatt
agatcggtgcccctcacattaaacgcagaggttgtacctgctgtttttgaggtgcggggt
gaggtcttgatgcatcgggatgatttttataagctgaatgctgagcaagaaaaacgtggt
atcaaagcatttgttaatccccgtaatgcagcggcaggtagtttgcgtcagcttgactct
aacattacccgtcgtcgtcatttgcgtttttatgcctatggctggggtgaggttgagaca
accgagcagttaccgacaacgcagtcagccatgatggataagctcaaagacttcggtttt
gttatttctccagagcgtgaagtggttaaagggactgagggcttattagccttttatcaa
atgatagaagctaagcgcgctaatctgcctttcgatattgacggtattgtttataaggta
aatagtttacacttgcaagacgcattaggttttatttcccgtgcaccacgttttgcctta
gcgcataagtttgctgcggaggaaatgcaaacactattagaaggtatcgaaattcaagtt
ggacgcacaggtgcgctaacaccggtagccaggcttaagccggtatttgtcggtggggtg
acagtgactaatgcgacactacacaatgaggatgagattcgtcgtaaggatgtacgtatt
ggagataccgtcatcgtgcgccgtgcgggtgatgtgattcctgaggtgttggcgccggtg
cttgagttacgccccgaaggagcagtgccgtttcagatggtcacggagtgtcctgtttgc
gcgtcggcgattgagcggttaccgggagaggccgtctggcgttgtaccggtggtttgttt
tgtcgtgctcaacgggtccaaagccttattcatgcagcaagtcgtaaggccttagatatt
gagggcttgggcgataaattagcagagcttttagtcgaaaaggaatgggtcaagtcactg
gcggatttatatcgtcttcgagcagagtctatttctaccttagatcgcatggggcctaaa
tcgtcacagaacctcatcaatgccattgagaaaagtaaaaatgtgaagctctccaatttt
attttttcacttggcatacgtcatgtgggtgaagcgacggcgcgagagttagccgctcat
ttcggcagtatggcggcattatcgcaagcgaccattgaagagctgctgacactaaatgac
gtgggtccggcaattgctgaatccattaggcacttttttgatgagaagcataaccagcag
gtgattcatgaacttgcggaattgggtatcaatccgattcatgagggccgtagcgcttct
cctatggtggctggagcaggtgattcagcgataaatgccgatgtgacagctgctgttgcc
ggtaaaaccttcgtgctaactggtaccttgcctaattggacgcgtgacgaagcatctgat
tacttacgcgaagcgggtgcgaaggtgaccggttcagtgtccaaaaaaacggattatgtg
gtggccggcgaagatgcaggtagtaagttaagaagagctgaagagttgggcgtgacggta
ctcgatgaagatgccttaaaggctttactgggaatgagctga
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