Oscillibacter valericigenes: OBV_21910
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Entry
OBV_21910 CDS
T01636
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ova
Oscillibacter valericigenes
Pathway
ova03030
DNA replication
ova03410
Base excision repair
ova03420
Nucleotide excision repair
ova03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ova00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OBV_21910 (ligA)
03410 Base excision repair
OBV_21910 (ligA)
03420 Nucleotide excision repair
OBV_21910 (ligA)
03430 Mismatch repair
OBV_21910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ova03032
]
OBV_21910 (ligA)
03400 DNA repair and recombination proteins [BR:
ova03400
]
OBV_21910 (ligA)
Enzymes [BR:
ova01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OBV_21910 (ligA)
DNA replication proteins [BR:
ova03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OBV_21910 (ligA)
DNA repair and recombination proteins [BR:
ova03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OBV_21910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OBV_21910 (ligA)
MMR (mismatch excision repair)
DNA ligase
OBV_21910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OBV_21910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
HHH
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
BAK99389
LinkDB
All DBs
Position
complement(2081272..2083248)
Genome browser
AA seq
658 aa
AA seq
DB search
MDYREEMKRLRAELNENAYRYYVLDEPTMSDYDYDMKNRRLQQLEREHPDEITPDSPTQR
VGDKLKAGFATYRHEVPLESLQDVFSAAEVEDFCRRMEEALGADVEYSLEPKVDGLSVAL
EYRDGVFISGATRGDGRVGENVTENLRTIRSIPMTLPEKLPRLIVRGEVYMARSVFDEIN
QQREIEGKPLMANPRNAAAGSLRQLDPKIAAARRLDIQIFNLQLVEGREFATHSETLDYL
ASQHFRVIPHRTLRTVAQCQQEIIDINERRMSYPYDMDGAVIKVNSLADREQLGSTVKCP
KWAIAYKYPPEQKPSRVMDIVVQVGRTGVLTPKAVLSPVHLAGTTVQSATLHNQDYIAEK
DIRIGDTVLVQKAGEIIPEIVEVDVSKRPQGSVPYELPKVCPVCGAPVTRDVDGAAVRCT
GAECPAQQLRNITHFASRDAMDIDGLGPAVIQQLIDTGLIHSAADLYSLTEQAFSGLDRM
GEKSAANAVAAIEKSRENDLGKLLYALGIRQVGVKAGRVLALHFKTLDALERASLEELTA
IDDVGGITAGFILGWLKSSQSQDLLKKLRQAGVNMTCTEQAVDDRFAGMSFVLTGTLTRF
DRKTAEAMIESRGGKASGSVSKKTSYVVAGDAAGSKLQKAQELGVPVLTEDEFAKMLE
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggactatcgggaggaaatgaagcgactgcgggcggagctcaacgagaacgcctaccgc
tattacgtgctggacgaacccaccatgtcggactatgactacgacatgaaaaaccggcgt
ttgcagcagttggagcgggagcacccggatgagatcaccccggattcccccacgcagcgg
gtgggcgacaagctgaaggcgggatttgccacctatcgtcacgaggtaccactggagagt
ttgcaggacgtgttcagcgccgccgaggtggaggatttctgccgccggatggaggaagct
cttggcgcggatgtggaatactcgctggagccaaaggtagacggactgtccgtagccctg
gagtaccgggacggcgtgtttatcagcggcgccacccggggcgacgggcgggtgggcgaa
aatgtgacggaaaatctgcgcacaatccgttccatccccatgacgctcccggaaaaactg
ccccggctcattgtccggggcgaggtctacatggcccgctccgtgttcgacgagatcaac
cagcagcgggagatcgagggcaagcctctcatggccaatccccggaacgccgccgccggc
tccctgcgtcagctggacccgaaaatcgccgcggcgcggcggctggacatccagattttc
aacctgcagttggtggaggggcgggagtttgccacacactccgaaacgctggactatctg
gcgagccagcattttcgggtcattcctcaccgtacgctccgcactgtggcacagtgccag
caggagatcatcgacatcaatgagcggcggatgagctatccctatgacatggacggtgcg
gtcatcaaggtcaacagccttgctgaccgggaacagctgggcagcactgtgaagtgcccc
aaatgggccattgcctacaagtatccgccggagcagaagccgagccgggtgatggacatt
gtggtccaggtgggccgcaccggcgttctgacgcccaaggcggtgctttccccggtccat
ctggcggggaccaccgtccaaagcgccacgctgcataatcaggattatatcgctgaaaag
gacatacgcatcggggacaccgtgctggttcagaaggcgggggagatcatcccggagatt
gtggaggtggacgtttccaaacggccccaggggagcgttccctatgagctgccaaaggtc
tgccccgtctgcggtgcgcccgtgacgcgggacgtggacggcgcggcggtgcgctgcacc
ggcgcggagtgtccggcccagcagctgcggaacatcacgcattttgcaagccgggacgcc
atggatatcgacgggcttggccccgccgtgatccagcagctgatcgacaccggcctgatc
cactccgccgccgatttgtacagtctgacggagcaggccttttccgggttggatcggatg
ggggagaagtccgcagccaacgcagtggctgccattgagaagtccagggaaaacgatctg
ggaaaattactttacgcgcttggcatccggcaggtcggcgtgaaagcgggccgggtgctg
gcactgcacttcaagacgctggatgcgctggagcgcgcctccctggaggagttgaccgcc
atcgacgacgtggggggtattacagccgggtttattctgggctggctaaaaagctcccag
tctcaggaccttctcaagaaactgcgtcaggccggggtaaacatgacatgtacagagcag
gcggtggatgaccgttttgcggggatgtctttcgtcctcaccggtacgctgacccggttc
gaccgcaaaaccgccgaggccatgattgaatccagaggcggaaaggcctctggctccgtg
tcgaaaaagacctcctatgtggtggcgggagacgccgccgggagcaagctgcaaaaggcg
caggagctgggcgttcccgtgctgacagaggacgagttcgcaaagatgctggaatga
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