Opisthorchis viverrini (Southeast Asian liver fluke): T265_08857
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Entry
T265_08857 CDS
T04902
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ovi
Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ovi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
T265_08857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ovi03400
]
T265_08857
Enzymes [BR:
ovi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
T265_08857
DNA repair and recombination proteins [BR:
ovi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
T265_08857
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
20323036
NCBI-ProteinID:
XP_009173038
UniProt:
A0A074ZCA3
LinkDB
All DBs
Position
Unknown
AA seq
1154 aa
AA seq
DB search
MDVVSEGDRIAKHVSFSTSCHLLDKLRGLKVAKAKKAVLARFILLWETQYFGLPGADTRA
GAGRASFYPLLRLMLPQFDRARPAYGLRETALSRLYIKAFGIASTGPVAQSLMHPTGQST
NLTRNADFADLVFDVVRNRCREDSVLNLKDVNELLDKLAGAQSADERLSTMQNFMRSATA
LEHKWLVRLVVRRDSGCGMTAANVLHCLHPAAPDLWDVTQDLTLLCQRIADLDPKVSPSS
LSSVSQDGATVNLFVPFRPMLCERSDSPELLCASALALCTLGGTAPTELGLMLETKYDGE
RVQVHKSGTSYRYWSRNCLEWTASYGADGDQDIGSLTPRLHKAFASHVQSCIIDGEMMAY
NTWTDVIMPKTTGFDVKRSHLDSDLFRNPPLSAEDAENYQPCLIVFDLLYLNGEVITNKT
VVERKRLLAQVFGLEPTANSCISERPLASTYDDSETPPVVCPPPLPVIDGTIYLSGWCQV
PIMADHIIKVFDYLMDYRQEGLVAKLTVGRSPYLPGRRQRGGWWKLKPDYVSGLLEDLDC
LIVGGYFSSASGSKHLNQSKRVRQFLCAVRGPDHSNQQDDLPLPCFLSFCRVSAGLTVKQ
FKELNHKLGPHWKPFDRKHPNTGFTEWLRVTTERPDVWIAPQHSVTLQLHASELISSGSY
ATGLTARFPRVVAVRDDKPWQDCLTMEELVRLNTETQGKLAVRRLAKLEGSDYPLSDNDA
IDRSLVEPSSPSDRNDPTLLEDELSLSSDTHNTSTSDEKSYGNLYVGTKRSSTPRATSTP
VKKRRLPVRSVQNTAMARSLPDVMRPSSLFLPSVNFMENREFCLLFSADMSSADKEELEQ
EIKAAGGTVVQNPRSSTFCIIADKLTAKTRNILAACSTSPGGKRSGGNSAHMYNIVSVSW
LESCLEAGKLLPWRPNHLLVMKPETAESLNTEFDSYGDSFTEPLTVDGLKELLSQAFEGD
DGESSRPQGIAATVTSVRLVYLQNPSFDTLAEFIGLTRTIDSDFPPLRPLGGYIILPVRL
PQASETSLDVQKYDTYSDCQELEDRLLLADLRSLGAIVFPVHVIDTEQSIAQAMDLVDHT
LRSLSESHEGSWTLSHLLLLSEEGNPNREQIFRGFRCKSTSDQPYFVTKTWALKCVSDKV
QVPENSFLFTLDQE
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggtatccgagggtgaccgtatcgcgaaacatgtatcgttctccacctcttgc
cacctgttggacaagctaagagggttgaaagttgccaaggcgaaaaaggctgtactggct
cgattcattcttctctgggaaacacagtattttggtttacccggtgctgacactcgtgct
ggggctggtcgtgcaagtttctacccacttctgagactaatgcttcctcagtttgatcgg
gctagaccggcttatggattacgggaaaccgctctgtccagattatatattaaagctttt
ggcatagctagtacgggtcctgttgctcaaagtctcatgcatccgaccggacagtcaaca
aacctgacaagaaatgctgattttgcagacttggtttttgacgttgttcggaatcgctgc
agggaagacagtgtgttgaatttaaaggacgtgaatgaacttctggataaactcgctggt
gcgcagtctgcggacgagcgactcagcacgatgcagaactttatgcgttcagctacggcg
ttggagcacaaatggcttgtacgtttggttgtacgacgtgattctgggtgtggaatgact
gccgcaaatgttctgcattgtctgcatcccgcagcacctgatctttgggatgtgacgcag
gacctgactttgctttgtcaacgcattgcggatctggatccaaaagtctcaccttcgtca
ttatcatcggttagtcaagacggagcaacagtcaacttattcgtcccttttcgaccgatg
ctttgtgaacgctccgattccccagaattactttgcgcatctgcgctagctttgtgcacc
ctcggtgggactgctccaacagaattgggcctgatgttggagaccaagtatgatggtgag
agggttcaggttcacaaatccggcacctcatatcgctattggtcccgtaactgcttggaa
tggactgcgagctacggtgccgatggagatcaggatataggctcacttacaccacggctc
cacaaagctttcgcttcccatgttcaaagttgcataatcgacggagagatgatggcttac
aacacctggacggatgtgataatgccaaaaactacgggcttcgatgtcaagcgcagccac
ctggacagcgatctattccgcaacccaccactgtccgctgaggatgcagagaattatcag
ccctgtttgattgtgtttgatttactctatttaaacggagaagtcataaccaacaaaact
gttgtggaacgcaagcgcttgcttgctcaagtatttggtctagagccgacagccaacagt
tgcatctctgagcgaccactggcctcaacgtacgatgactcagaaactccaccggtcgtc
tgcccccctccactccctgtgattgacggcaccatttacctatcaggttggtgccaagtt
cctataatggcggatcacatcatcaaagtgtttgattatctaatggactatcgtcaagag
ggtcttgtggctaaactcacagtcggccgaagtccttatctccccggtcgtcgtcagcgg
ggtgggtggtggaagttaaagccagattacgtatccggtctactggaagatttggattgt
ctgattgttgggggttacttttcttcagcatcaggttccaagcatctcaaccagagtaaa
cgagtacgacagttcttgtgcgctgtccgcggtccggaccattcgaaccaacaagatgat
ttacctctaccttgttttctctctttttgccgtgtcagcgctggacttacagtcaaacaa
ttcaaagaactaaatcataagcttggcccgcactggaaaccattcgaccggaaacaccca
aacacaggattcactgaatggcttagagtcacaaccgaacgaccagatgtttggatagca
ccgcagcattcggtaacactgcagttacatgcctccgaactcatttcaagtggttcgtat
gcgaccggcctcacagctcgctttccgcgtgtggtcgctgtgcgagacgacaaaccatgg
caggactgtctcacaatggaggaacttgtacgcttgaatacagagacacagggtaaactt
gctgtcagacgccttgctaagctggagggtagtgattacccactcagtgataacgatgcg
atcgatcggtccctcgttgaaccatctagtcccagtgaccggaatgatcccaccttattg
gaggatgagctgtcgttgagttccgatactcacaatacgtctacaagcgatgaaaagagt
tatggtaatctatacgttggcacgaagcggtctagcaccccacgagccacatcaactcca
gtgaagaagcggagactccctgttagatccgtgcagaacactgcaatggctcgttctctg
cctgatgttatgcgtccttcaagtttgtttcttccaagtgtgaacttcatggaaaatcgt
gagttttgccttctattctctgcggacatgagctcggcggacaaagaggaattggaacag
gaaatcaaggcagctggtggtactgttgtgcaaaatccgcggtcgagcacattttgcatc
atagcagataaattaacggctaaaacccgcaacatcctagctgcctgtagcacctctcct
ggtggcaaacgttcaggaggtaattcagcgcatatgtacaacatagtctccgtttcgtgg
cttgaatcctgtcttgaagcaggaaagctactaccttggcgacccaatcatttgttggtg
atgaagccagaaaccgctgaaagtttaaataccgaattcgacagctatggagacagtttc
actgaaccgctgacagtggatggcctaaaagagttactgtcgcaggcgtttgaaggagat
gatggagagtcaagtcgtccacagggaatagcggctacggtaacatctgtccgtttggtc
tatctacagaacccttcattcgatactttggctgaatttattggcttaacgagaacaatc
gattcagacttccctccacttcgaccgctcggtggatacatcatcttgccggtacggctt
ccccaagcatctgaaacctcactggatgttcagaagtatgatacctattcggactgccag
gaactcgaagatcgactactgttagctgatcttcgttcacttggggccatcgtgtttcca
gttcatgtgattgatacagagcagtcaatagcacaagcgatggacttagtcgatcacaca
ctgcgcagtttatccgaatctcatgaaggctcctggacattatcgcatttgttattgtta
tcggaagaaggcaatccgaatcgggaacaaatttttcgagggtttaggtgcaagtctact
tctgaccagccatattttgtcacgaaaacatgggcactcaaatgcgtaagtgataaagtt
caagtcccggaaaattcattcttattcactctggaccaagaataa
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integrated database retrieval system
