Opisthorchis viverrini (Southeast Asian liver fluke): T265_15424
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Entry
T265_15424 CDS
T04902
Name
(RefSeq) hypothetical protein
KO
K23600
TAR DNA-binding protein 43
Organism
ovi
Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ovi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
T265_15424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovi03019
]
T265_15424
Messenger RNA biogenesis [BR:
ovi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
T265_15424
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_PARP14_3
RRM_7
PAS_NblS
DUF7242
Motif
Other DBs
NCBI-GeneID:
20329589
NCBI-ProteinID:
XP_009176309
UniProt:
A0A074Z330
LinkDB
All DBs
Position
Unknown
AA seq
575 aa
AA seq
DB search
FRLRTSGDAEAAAARYVVVSIVLSERAEASLLDWIPVDSRLCAVRLATSVRESRRSEVHR
TLFIVSAYAPTDCSSESAKDSFYDALGALLQLAKSSDIVVIAGDMNDQLEREFTDRKDCG
SNPCSGLCNLVVSRPSCPLWAAWQLGTEGVLQLNDFVSSLFSEMNHVVYARICEEEGTEP
VELPVEADGTLLLPTLTAQFPKCTGLKYKSEDSGCFRGLRLVGDHIYPPVETDWDNVFYC
VFPKDKKRKGDEDTEDTKQKVKCLEGRKCTDLIVLNLAWQTDETKLRNYFSQFGDLVMVQ
IKKDPDTGKSRGYGFVRFSDYSGQAMCLAERHMIDGRLCDVRIPLSKQEGDRQEVSRKIH
VGNLPESIGADALRQHFLQYGLVIDVFIPKPFRSFAFVTFDDPDVAASLLGKDLTIQGHK
VTIGSAVPKLPSHVRQNPAFENAGGNLRSPYPGSPMAHGPLWNSPWSPALGMFPGGGAYG
GSPNGGLRNSMGLNPAAAAAAATLAAQYTRAHQRQSSGANMNGGYPDAKPSPDANTNAAL
AALNILNNPNVVAAIVSAAAGVSKGQSSFTNSGPR
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
ttccgactgcgcacctctggtgatgcagaggccgctgcagctcgatatgttgtagtgagt
attgtattgagcgaacgagcggaagcgtctctgcttgattggatacccgtagacagtcgc
ctctgtgcggttcgtttggcaacgtcggtgagagaatctagaagaagtgaggttcatcgc
accttgtttattgtttctgcttatgccccaactgactgtagctctgaatctgccaaggac
agtttctatgacgctctaggtgcccttctacaactggctaaaagctcagatatcgttgtg
attgctggtgatatgaacgaccagttagagcgcgaatttactgaccggaaggactgtggt
tcaaacccctgttcaggcttgtgcaacctggtagtatcccggccctcatgccccctttgg
gcggcatggcagttgggcactgaaggagtgctacagttgaacgattttgtatcgtcttta
ttttcagaaatgaatcacgtagtttatgcccgcatatgtgaggaagaaggaaccgaaccg
gtggagcttcccgtagaagctgacgggactctacttctcccaacactgaccgctcagttt
ccaaagtgcacgggattgaaatataaatcagaggattccggttgctttcgtggtctgcgc
cttgtgggggatcatatctaccctcctgtggaaactgattgggacaacgttttctactgt
gtattcccgaaagacaaaaaacgtaaaggtgacgaggatactgaagatacgaagcagaag
gtgaaatgtctggaagggcgcaagtgcacagatttgatcgtcttgaatctggcctggcaa
accgacgagacaaagctgcgcaattatttctctcagttcggagatctagttatggttcag
ataaaaaaggatccggacaccggtaagagtcgtggatacggattcgtccgtttcagtgac
tacagtggtcaagccatgtgtctggctgaacgccacatgattgatggccgattgtgtgat
gttcgcataccactgtccaagcaagaaggagaccgacaagaagtcagtcgaaagatacac
gttggcaatcttccagagagcattggcgcggatgctcttcgtcagcattttctccagtat
ggactcgttattgacgtattcatccctaaaccgttccgctcgtttgccttcgtgacgttc
gatgatcccgatgttgctgcttccttgctgggcaaagatttgacaatccagggtcacaaa
gtgaccataggttcggccgttcccaaactgccttcccatgttcgtcaaaaccccgcattc
gaaaacgcaggggggaatttgcgttctccttatcctggcagtccaatggcacatgggcct
ctatggaacagtccatggtctccagcacttggtatgttcccaggcggtggtgcttacggg
ggctcaccaaacggtggtctgcgcaattcgatgggattgaatccagcggcagcggccgcg
gcagccaccctagccgcacaatacacccgtgctcaccagcgacagagttccggtgccaac
atgaacggtggttatcctgatgcgaaacctagtcctgacgccaacaccaacgccgcgctg
gccgctttaaacattttgaacaatcccaatgttgttgctgcaatcgtgagtgccgcagcc
ggagtgtccaagggtcagtcatcatttacaaattcagggccccgttga
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