Odocoileus virginianus (white-tailed deer): 110132812
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Entry
110132812 CDS
T10722
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X2
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ovr Odocoileus virginianus (white-tailed deer)
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ovr03036
]
110132812 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ovr03400
]
110132812 (SMCHD1)
Chromosome and associated proteins [BR:
ovr03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
110132812 (SMCHD1)
DNA repair and recombination proteins [BR:
ovr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
110132812 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_2nd
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
OpuAC
IFT20
Motif
Other DBs
NCBI-GeneID:
110132812
NCBI-ProteinID:
XP_020742019
UniProt:
A0A6J0X115
LinkDB
All DBs
Position
22:complement(21094468..21219755)
Genome browser
AA seq
2005 aa
AA seq
DB search
MAAADGGGPSVETGEGGGADGPRTVYLFDRREKESELGDRALQVEEHSDFVAFRASVCQT
LGISPGEKFVITTTSRKEITSDNFDETVKDGVTLYLLQSVNQLLQTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRRIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELLLSKEDFEKKEKNKEAIYSGFIRNRKPSDSSHITNDDE
RFLHHLITEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEKH
ISKEAGPFNNIDIEISMFEKGKTPKIINLRGIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPFECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIH
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFLFGLLDPPFRVGVPFNI
PVEFQDEFGHTSQLSTDIQPVFEASGLTLHYEEITKGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPHRIKVKPDSEILVIENGTAFPFQVEVLDESDNITVQ
PKLIVHCKFSGAPNLPVYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIHI
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVVTVTDQYGNQIQAFSPSSLSALGIAGIGLDS
PHLKTTFQENTQSISVRGVRFIPGPPGNKDLCFTWREFSDFIRVQLVSGPPAKLLLVDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLVKANNLKLTPSNQQHKTDERG
RANLGVFSVFAPRGEHIMQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWKLANSGNRPPANVEVFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFTMDKANILNSEQIIVDVLPNQPVKLVPEVQPATPAVS
NVRSVASRTLVKDLYLRITDDYNNHTGVDLVGTVMATIKGSNEEDDIPLFNGKIRTLEFP
FVKGSAEITSLVLAENSPGRDSTEYFIVFEPRLPALSRTLESYILPFMFYNDVKKQQQMA
ALTKEKDQLSKSITVYRTLFDTSKQLLDEMKCQVEEAKLKEAQLRNELKNHNIDISTTQQ
MPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISWH
LASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGRLYFKPI
GDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRAAVCRLGSVNE
DLNGQLKYLHTPDMKRKKQELDEHEKNLKLIEQKLGMTPTRKCNDSLPHPMTDCPVPPKR
IRREAARQNRRSVILYRRGPVQKRL
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggatggcggcgggccctcggtggagaccggagagggtggcggagccgac
ggccccaggacggtgtacttgtttgaccggcgcgagaaggagtcggagctcggggaccgg
gcgctgcaggtcgaggagcactcggacttcgtggcgttccgcgcctccgtgtgtcagaca
cttggcatttcacctggagagaaatttgtcattacaacaacaagtaggaaagaaattacc
agtgataactttgatgaaactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactgcaaacagctactaaagaacgaattgacttcctacctcactatgacaca
ttggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttaccattt
gctcttgcagaattaattgacaattctttgtctgctacttctcgtaacactggtgttaga
agaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccactgcca
gtacctcgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacagtcagccagaatgataagtaagcctgcagactcccaagatgttcat
gaacttttactttctaaagaagattttgagaagaaagagaaaaataaagaggcaatatat
agcggatttattagaaacagaaagccctctgattctagtcacattacaaatgatgatgaa
cgatttctacatcatcttatcacagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggggtacaaccagaacacatacagtacttgaaaaattatttccatctttggacc
agacagttagcacatatttatcattattacatccatggtccaaaagggaatgaaaaacat
atatcaaaggaagctggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaagacacctaagattatcaacctgaggggaatacaagatgacatgcaaacattgtat
ataaatacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattatccgatatcaccctttcttatatgatagagaaacctaccctgatgatcca
tgttttccatcaaaattaaaagatgaagatgatgatgatgactgtttcatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcgcctttt
gagtgctacaataggatatctggtgcattatttactaatgacaaattccaggtcagcaca
aataaactgacctttatggatcttgagctaaaactgaaagacaagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagagtttgctttatggctg
aaggactgccatgaaaagtatgacaaacaaataaaattcaccctttttaaaggaataatt
acacgtcctgatcttccttctaaaaagcagggcccctgggccacttactcagcgatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacacttcctctc
ttttatggaagcattgtgaaattttttctctatggtgatcatgatggagaagtatatgct
acaggaggagaggttcaaattgcaatggaacctcaggcactgtatgatgaaataaaaact
gtgccaattgcaaagctggataggacagttgccgagaaagccgtgaaaaaatatgtagaa
gatgaaatggcaagactccctgatagattgtcagtgacttggcctgaaggagatgaatta
ttgccaaatgagatcagacctgctggaacccccattggtgcattaagaattgaaatatta
aataaaaaaggggaagcgatgcagaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgaactcaaagttatattacactcttcaagtggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccgtactggtttaaaaaaatggaaaatattcac
aagttggggaattatacattgaaattgcaagttgtcctgaatgaaagtaatgcggacact
tatgcaggaaggccactaccatctaaagcaattaaattttctgttaaagagggtaaacca
gagaaatttttgttcggtcttttggatcctccgtttcgtgttggagtcccattcaatatc
cccgtggagtttcaggatgaatttggtcatactagtcaactgtcaactgatattcagcca
gtttttgaagcaagtggtttaactttacattatgaagaaataaccaaaggaccaaattgt
gtcattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaagaattttaat
ctgaaggttattctgccgggtttaaaagaagactcacagattttaaaaattagattactt
ccaggtcctcctcatcgaattaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtggaagttttggatgaatcagacaatataacagtacaa
ccaaagctgattgttcattgtaagttttcaggtgctccaaaccttccagtctatgttgtg
gattgcagtagttctggaactagtattttatcaggaccagcaattcaagttcagaatatt
aaaaaagaccagacacttaaagcaaaaattgaaatacctagttgtaaagatgtggcacca
gtggagaagactatcaagttgctccccagtagccacgttgccagattacagatattcagt
gtggaaggacagaaggccatccagatcaaacatcaggatgaggttaactggatagctgga
gatgttatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccatata
acatcagctttggcagagaaaattaaagttaattggactcctgagattaacaaagagcac
ttactgcagggtctgcttcctgatgtacaagtaccaacatctgtgaaagatatgcgctat
tgccaggtttcattccaagacgatcatgtgtctttggaaagtgcatttacagtaagacca
cttccagatgaacctaaacatctaaaatgtgaattaaaaggaggaaaaacggtacagatg
ggtcaagagcttcaaggagaaatagttgtaactgttacagatcagtatgggaatcagatt
caagcattttcaccaagttctctgtctgcgttgggaattgctgggattggacttgatagc
ccacatttgaaaactacttttcaggaaaatacacaaagtataagcgtgagaggagtcaga
tttattccaggtccccctggaaataaggatctttgctttacttggcgtgaattttctgat
tttattcgagtgcagctagtttctgggccaccagctaaacttctccttgtagactggcca
gagttaaaggagtccattccagtgattaatggaagagaattgcagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacctgtgccacaggttaaaataagtcttgta
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaaccgatgaaaggggc
agagctaatttgggagtgttcagtgtttttgcccctagaggagaacatattatgcaggtt
aaagccatttataacaagaataccatagaaggacccataattaagttaatgattcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggaattttcactgattttatgattactgttatttctgaagatgatagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggaaactggcaaacagtgggaaccga
ccgccagcaaatgtagaagtatttagttgtaataaaataaaggataatgacaaagaagat
ggctgcttctacttcagggataaagcaattcctaacaaggtggggacatactgtatccag
tttggttttacgatggataaagcaaatattcttaacagtgagcagattatagtggatgtt
ctacctaatcaacctgtgaagttagttcctgaagttcagccagctacaccagctgtttca
aatgttcgctcagttgccagtaggaccctggtcaaagatttgtatcttcgtatcacggat
gactacaacaatcatactggagttgacttggttggcactgtaatggctaccattaaaggt
tctaatgaggaagatgacatacctctctttaatgggaaaattagaacacttgaatttccc
tttgtgaaaggttcagctgaaatcacgagtctagtgctagcagaaaacagtcctggaagg
gatagtactgaatattttattgtgtttgagcctcggctgccagctttatcaagaacgtta
gaatcatatatcctaccatttatgttttacaatgatgttaagaagcagcaacaaatggca
gcacttacaaaagaaaaggaccaattatccaagtctattacagtgtacagaactttattt
gataccagcaagcagcttcttgatgagatgaagtgccaagttgaagaagcaaaattaaaa
gaggcccagttgcgaaacgaactgaaaaaccacaatattgacatttctacaacacagcag
atgccacacattgaagcacttttgaaaagaaagctatcagaacaggaagaactaaagaaa
aaacccagaagatcatgtactcttccaaattatacgaaaggcagcggagatgttttggga
aagattgcacacctggcacagattgaagatgatagagctgcaatggttatctcttggcat
ctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgcacgtcgaatttat
gatgaaacccaaggtcgtcagcaggtgttgcccctcgattctatttataagaagactctt
ccagattggaaaagacctctacctcattaccgaaatggaagattgtattttaaacccatt
ggagaccccgtctttgcccgagacttgttaacttttccagataacgtagaacactgtgaa
acagtatttggtatgctgttaggagacactattattttggataatttggatgctgccaat
cattacagaaaagaggttgttaaaattacacactgtcctacactgctgaccagagatgga
gatcgcattcgaagtaatgggaagtttgggggccttcagaataaagctcctccaatggat
aaactccggggaatggtgtttggagctccagtaccaaaacagtgcctcatcttaggggag
caaatagatcttcttcagcagtaccgcgctgctgtgtgcaggttgggcagcgtgaacgag
gaccttaatgggcagctgaagtaccttcacactcccgacatgaagaggaaaaaacaagaa
cttgatgaacatgaaaagaatctcaagctgatagagcaaaaactaggaatgactcccaca
cgtaaatgtaatgattcactgcctcatccaatgacagactgtccagttcctcccaaaaga
ataagaagagaggctgcaagacaaaacaggaggtctgtaatcttgtacagaagagggcca
gttcaaaaaagattataa
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integrated database retrieval system
