Odocoileus virginianus (white-tailed deer): 110149040
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Entry
110149040 CDS
T10722
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110149040 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ovr03400
]
110149040 (LIG4)
Enzymes [BR:
ovr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110149040 (LIG4)
DNA repair and recombination proteins [BR:
ovr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110149040 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
110149040
NCBI-ProteinID:
XP_020767024
UniProt:
A0A6J0YZQ0
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All DBs
Position
8:27199246..27208212
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AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQKSKGRAEKVRHFKEFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCLQKGSLSIQQVNDILDSIASNNSAKRKDLMKKSVLQLITQSSA
LEQKWLIRMIVKDLKLGCSQQTIFSVFHSDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYRYFSRNGYNYED
QFGASPQEGSLTPFIHNAFKIDVLNCILDGEMMAYNPNTQTFMQKGNKFDIKRMVEDSEL
QTCYCVFDVLMVNDKKLGHETLRKRYEILNSVFTPIPGRIEIVQKTQAHTKKEVIDALNE
AIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILIIGGYWGKGARGGMM
SHFLCAVAEKPPSGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHRKAPPSNILC
GTEKPEVYIEPCNSVIVQVKATEIVPSDMYKTGCTLRFPRIEKIREDKEWYECTSLEDLE
QLRGKACGKLASKHLYMGGDDEPQEKKRKAAPKMKKVIGIIEHLKAPNLSNVNRVSTVFE
DVEFCVMSGTSSHPKPDLENRIAELGGYIVQNPGPDTYCVIAGSENIRVKNIISSDKHDV
VKPEWLLECFRTRSCVPWQPHFMIHMCPSTKHHFAQEYDQYGDSYFVDTDLHQLKEVFSG
IKNAGEQTPGEMSPVIADLEHRYSWASAPLSLFRHHTVYLDLYAVINDLSTRIKGARLAI
TALELRFHGAQVVSCLAEEVSHVIVGEDQSRVADLKAIRRTLKRKFKILQERWVTLSIDK
CELQEENRYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacaaacctcacagactgttgcatctcatgttccttttgcagatttatgt
tcaactttagaacgaatacagaaaagtaaagggcgtgcagaaaaagtcagacacttcaaa
gaatttttagattcttggagaaaatttcacgatgcccttcataagaaccaaaaagatgtc
acagattctttttatccagccatgagacttattcttcctcagctggaaagagagagaatg
gcctatggaatcaaagaaactatgctggctaagctttatattgaattgcttaacttgcct
cgagatggaaaagatgcccttaaacttttgaactatagaacaccgactggaacccgtgga
gacgctggagactttgcgatgattgcatactttgtattgaaacccagatgtctacagaaa
ggaagcctaagcattcagcaagtaaatgacattttagactccatcgccagcaataattct
gccaaaaggaaagacttaatgaagaagagtgttcttcagcttataactcagagttcagca
cttgaacaaaagtggctgatacggatgattgtcaaggacctaaagcttggctgtagtcag
caaactatattttctgtttttcacagtgatgctgctgagttgcataatgtcaccacagat
ctggagaaggtctgtaggcagctgcacgatccttcagtgggactcagtgacatttcgatc
accctattctctgcctttaaacccatgctggccgctatagcagatatcgagcgaattgag
aaggacatgaaacaccagagtttctacatcgaaaccaagctggacggcgagcggatgcag
atgcacaaggatggggatgtgtaccggtacttctctcgcaatgggtataactatgaggac
cagtttggtgcttccccacaggaagggtccctcacaccattcattcataatgcattcaaa
atagatgtgctgaactgtatcctcgatggtgagatgatggcctacaaccctaacacacag
acttttatgcaaaaggggaataagtttgatatcaaaagaatggtggaagattctgagctg
cagacttgttattgtgtttttgatgtgttgatggttaatgataaaaagctaggacatgag
accctgagaaagaggtatgaaattcttaatagtgttttcacacccataccaggtaggata
gaaatagtgcagaaaacacaagctcataccaagaaagaagtaattgatgctttgaatgaa
gcgatagataaaagagaagaggggatcatggtaaaacacccgctgtccatttacaagccg
gataaaagaggtgaaggatggttaaaaattaaaccagagtatgtcaatggactgatggat
gagctggacatcttaatcattgggggctactgggggaagggtgcccggggtgggatgatg
tctcattttttgtgtgctgtggcggagaagcccccttctggtgaaaaaccctcagtgttt
catactctgtgtcgcgttggctcgggttacaccatgaaagaactgtatgacctgggtttg
aagttggccaaacactggaagccttttcataggaaagccccaccaagcaacattctgtgt
ggaacagagaagccagaggtgtacatcgagccttgcaattcagtcattgttcaggttaag
gccacagagatcgtccccagtgacatgtataaaaccggctgcacgttgcgttttccacgg
attgagaagataagagaagacaaagaatggtatgaatgtacatccctggaggacttagag
caacttcgagggaaagcctgtggaaagctcgcatccaaacacctttacatgggtggcgat
gacgaaccacaagagaaaaagcggaaagctgccccaaagatgaagaaagtcattggaatt
atcgagcacctaaaagctcccaacctttctaacgtaaacagggtttctactgtgtttgaa
gacgtggagttttgtgtcatgagtggaaccagcagtcatcccaagcctgacctggagaac
agaatcgccgaactgggtggttacatagtacagaatccaggcccagacacgtactgtgtg
atcgcagggtctgagaacattcgagtgaagaatatcatctcttcagataaacacgatgtc
gtcaagccagagtggctgctagagtgttttaggaccagaagctgtgtgccctggcaaccc
cacttcatgatccacatgtgcccgtcaacaaagcaccactttgcccaggaatacgaccaa
tatggggatagttactttgtcgacacagatttgcaccaactgaaggaagtcttttcagga
attaaaaatgctggtgagcagactcctggggagatgagtcctgtgattgctgatttggaa
cacaggtattcctgggccagtgcacctcttagcttgtttagacaccacaccgtttatttg
gacttgtatgctgtcatcaatgacttaagtaccagaatcaagggagctaggttagccatc
acagccttggaacttcgatttcatggagcgcaggtagtttcttgtttggctgaggaggtg
tctcacgtgattgttggggaggaccagagtcgggttgcagacttgaaagctatccgaagg
actcttaagaggaagtttaaaatcttacaagaacgttgggtcactctgtcaatagacaag
tgtgaattacaggaggaaaatcgatatttggtctga
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