Orbus wheelerorum: RHO14_08770
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Entry
RHO14_08770 CDS
T10511
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
owh Orbus wheelerorum
Pathway
owh03030
DNA replication
owh03410
Base excision repair
owh03420
Nucleotide excision repair
owh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
owh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHO14_08770 (ligB)
03410 Base excision repair
RHO14_08770 (ligB)
03420 Nucleotide excision repair
RHO14_08770 (ligB)
03430 Mismatch repair
RHO14_08770 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
owh03032
]
RHO14_08770 (ligB)
03400 DNA repair and recombination proteins [BR:
owh03400
]
RHO14_08770 (ligB)
Enzymes [BR:
owh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RHO14_08770 (ligB)
DNA replication proteins [BR:
owh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RHO14_08770 (ligB)
DNA repair and recombination proteins [BR:
owh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RHO14_08770 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHO14_08770 (ligB)
MMR (mismatch excision repair)
DNA ligase
RHO14_08770 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHO14_08770 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DUF5673
HTH_OrfB_IS605
Motif
Other DBs
NCBI-ProteinID:
WVD70447
LinkDB
All DBs
Position
complement(1951025..1952698)
Genome browser
AA seq
557 aa
AA seq
DB search
MQKIVLIILLLANMGWANCPNFTTYQAEKELLSLESQIAIWDNAYFINGHSLIPDEVYDQ
VLNRYQQLLICFPNYQQTDFSQQVIINHKIIHPVVHTGVKKLTSIDAIKNWMVNKTDLWL
QPKIDGVAVTLIYEHGILVSAISRGNGSYGENWTEKVKLMPMVPQKIITLTPQVLLQGEL
FWLVENHIQKQHGSNNYRSKVAGALMEKLPNHEKLSQIRFWVWEWPAGPPMMTQRLTELK
QMGFNYGVDDTTAISTFLQAQAIREQLFNSPLNYPTDGIIIREGKRPAGQYWQVKEPYWI
IAWKYPIQEKLTVVKDIQFSVGRTGKISTIIYIEPITIDSKKITRLYLGSINQLIKTDIA
IGDSIAVKLSGQSIPQLKSIVWRAFDRKKQLLPDEKVYTFMTCFTYSKACHQQFLARLAW
LSGKQGFNFNHIGQATWLKLVNEGKVTSVISWLELELNDFANIPSISEQQANNLFAQFQL
AKQSSFVLWLAALGITDLPPTINQYCWQDIVLWSIDEWQTKTNISLSKAKKYRLLVNSEQ
INKLQKTLARQKVSGFF
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaattgtgctgataattttattactagctaatatggggtgggcgaattgccca
aattttactacctaccaagccgaaaaagagctactttcactcgaaagtcaaattgcgatt
tgggataatgcctattttattaacggacattcattaattcctgatgaagtctatgatcaa
gtgctaaatcgttaccaacagttgcttatttgttttccaaattatcaacaaactgatttt
agtcagcaagtgataatcaaccataaaattattcatccagttgttcatactggcgtaaaa
aaactaacatcaatcgatgcaataaaaaactggatggtaaataaaacggatctttggttg
cagcctaaaatagatggcgttgcggtgacactcatctatgaacatggcatattagtttca
gcaattagccgcggaaacggtagctatggtgaaaactggaccgaaaaagtcaaattaatg
cccatggtacctcaaaaaataataactctcacgccacaggttttattacaaggcgagcta
ttttggctggttgaaaaccatatacaaaagcagcatggcagcaataactatcgttcaaaa
gttgctggcgctttaatggaaaaattaccaaatcacgaaaaattaagccaaattcgattt
tgggtatgggaatggccagctgggccaccaatgatgacgcagcgcttaacagagttaaaa
cagatgggatttaattatggggttgatgatacaacagccattagcacttttttgcaggca
caggcaattcgtgaacaattatttaactccccgcttaattatcccaccgacggtattatt
attcgcgaaggcaaaaggccagcagggcaatattggcaggttaaagaaccgtattggatt
atcgcttggaaatacccaatacaagaaaaactaaccgtcgttaaagatattcaattttct
gttggccgaaccggtaaaatatcaacaattatttatattgaacccattaccattgatagt
aaaaaaataacccgtttatacctcggttcaattaatcaacttatcaaaactgatattgct
attggtgatagcattgccgttaaattatcagggcagagtattccacagttaaaatcaatt
gtttggcgcgcattcgatcgtaaaaagcagctattacctgatgaaaaagtttatacattt
atgacatgctttacatatagtaaggcttgtcatcaacagtttttagcgcgcctggcttgg
ttgagtggtaaacagggtttcaattttaatcatatcggccaagcaacttggttaaagttg
gtaaatgaaggcaaagtcacctcggtgattagctggttagaactagaacttaatgacttt
gctaatattccaagtattagtgagcaacaggccaataatctctttgcccagtttcaatta
gctaaacaatcatcatttgttctatggctagcagcattaggcataaccgatttaccacca
acaattaatcaatattgctggcaagacatcgtcttatggagcattgatgaatggcaaacc
aaaacaaatatatctttatctaaagcaaaaaaatatcgattattagtgaatagtgagcaa
attaataagctacaaaaaaccttagcaaggcaaaaggttagcggatttttttag
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