Orbus wheelerorum: RHO14_09470
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Entry
RHO14_09470 CDS
T10511
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
owh Orbus wheelerorum
Pathway
owh03030
DNA replication
owh03410
Base excision repair
owh03420
Nucleotide excision repair
owh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
owh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHO14_09470 (ligA)
03410 Base excision repair
RHO14_09470 (ligA)
03420 Nucleotide excision repair
RHO14_09470 (ligA)
03430 Mismatch repair
RHO14_09470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
owh03032
]
RHO14_09470 (ligA)
03400 DNA repair and recombination proteins [BR:
owh03400
]
RHO14_09470 (ligA)
Enzymes [BR:
owh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RHO14_09470 (ligA)
DNA replication proteins [BR:
owh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RHO14_09470 (ligA)
DNA repair and recombination proteins [BR:
owh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RHO14_09470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHO14_09470 (ligA)
MMR (mismatch excision repair)
DNA ligase
RHO14_09470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHO14_09470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
BRCT_2
RTT107_BRCT_5
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WVD70582
LinkDB
All DBs
Position
complement(2122487..2124535)
Genome browser
AA seq
682 aa
AA seq
DB search
MNTKQSPTEIENQIAQLRQIIRQHEYQYYVLDDPKIPDAEYDKLIANLTTLEQHYPEFIT
PESPTQRVGGIALSQFKTIKHEMPMLSLDNVFDQDSFMAFDKRVRERANLGDSDVEYCCE
LKLDGLAVSLLYEKGKFIRAATRGDGTVGEDISENIKTIRAIPLALTGDDIPARLEVRGE
VFMTHQGFDKLNQDAQKRGEKIFANPRNAAAGSLRQLDPKVTAKRSLAFYCYGMGIFEGK
SLPDTHYGRLMQFKKWGFPVSDKVIIKHGCDEAINYFNDIEQQRMALGFDIDGVVIKVNS
ISLQEQLGFVARAPRWATAFKFPAQEQVTQLRKVDFQVGRTGAITPVARLEPVQVAGVIV
SNATLHNSDEIERLGLREGDYVTIRRAGDVIPKVVAVIFDKRPKETKEIEFPTHCPICGS
IIVRDEGEAISRCSGGLFCPAQRKEALKHFVSRKALDITGLGDRIIEQLVDKDYVKNPVD
LYSLTLPMLCSLDKVGEKLATNLLNSLQATKETTLARFIYALGIPHVGEVTAENLANELG
SIENIRQSNAEQLQNVSDVGEVIALSIVNFFKEEHNRYIIDELISEKIAIHWPQNIVKTL
VTDSIFKDKVIVLTGSLSSMSRDEAKDKLKQLGAKITGSVSKNTDIVIAGEAAGSKLAKA
EQLNIQVIGEQEMLDYFAQTTI
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgaaacaaagcccaaccgagatagaaaatcaaatagcccagttacgccaaatt
attaggcaacatgagtatcagtattatgtattagatgatcctaaaattcctgatgctgag
tacgataagttaatcgctaaccttaccacactcgaacaacattatcctgagtttatcacg
ccagaatcccccacccaacgtgttggcggcattgcattaagtcaatttaaaaccatcaaa
catgaaatgccgatgttatcattagacaatgtctttgaccaagatagttttatggcattt
gataaaagggtgcgtgaacgtgctaatttaggtgatagcgatgttgagtattgctgtgag
cttaaacttgatggtttagcggtgagtttattatatgaaaagggtaaatttattcgcgca
gcaacgcgtggtgatggcactgttggtgaggatattagtgaaaatatcaaaactattcga
gccatacctctcgcattaacgggtgatgatattccggcaaggttagaagtacgcggcgaa
gtatttatgactcatcaaggctttgataaattaaatcaagatgcgcaaaaacgcggtgag
aaaatttttgccaatcctcgtaatgcagccgctggttcattaaggcaacttgatccaaaa
gtaaccgctaaacgatcgttagccttttattgctatggtatgggcatttttgaaggaaaa
tcactacccgatacccattatggtcgtttaatgcagtttaaaaagtggggctttccagtc
agtgataaggttatcatcaaacatggctgcgatgaagcaattaactattttaatgatatt
gaacaacaaagaatggcattgggatttgatattgatggcgtggttattaaggtcaattca
attagcttgcaagaacagttagggtttgttgctagagccccccggtgggcaactgccttt
aaatttccagcacaagaacaagttacccaattacgtaaagttgattttcaagttgggcga
acaggggcaattacgcctgttgcaaggttagagccagtacaagtagctggcgttatcgtg
agtaatgcaacactacataatagtgatgagattgaaaggttaggtcttcgcgaaggtgat
tatgttactattcgacgtgcaggtgatgttattccaaaagtggttgcagtgatcttcgat
aaaaggcctaaagaaaccaaagaaatcgaattcccaacccattgccctatctgtggttcg
ataattgttcgtgatgaaggtgaggctatttctcgttgttctggtgggcttttttgccca
gcacagcgtaaagaagcattaaaacactttgtatcaagaaaggcactcgatattacgggc
ttgggggatcgaattattgaacaacttgttgataaggattatgttaaaaatccagtagat
ctttattctttaactctaccgatgctttgttcattagataaagttggtgaaaagcttgca
acaaatctacttaattctttgcaagcaacgaaagaaactaccttagctcgttttatttat
gcactaggtattcctcatgtaggggaagtgactgccgaaaacttagctaatgaactcggt
agcattgagaatattcgtcagagtaatgctgagcagctacaaaatgtcagtgatgttggt
gaagttatcgcgctaagtattgttaatttttttaaagaagaacataaccgatatattatt
gatgagcttatcagtgaaaaaattgctatccattggccgcaaaatattgtaaaaacgtta
gtcactgatagtatttttaaagataaagtcatcgttttaacgggttcattatcttctatg
agccgtgatgaggcaaaagataagcttaaacaattaggtgccaaaattactggcagcgta
tcaaaaaataccgatatcgtaattgctggtgaagcggcgggttctaaactggccaaagca
gaacaattaaatatccaagttatcggtgaacaagaaatgttagactattttgctcagact
acaatttga
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