Oxynema aestuarii: HCG48_04075
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Entry
HCG48_04075 CDS
T06528
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oxy
Oxynema aestuarii
Pathway
oxy03030
DNA replication
oxy03410
Base excision repair
oxy03420
Nucleotide excision repair
oxy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCG48_04075
03410 Base excision repair
HCG48_04075
03420 Nucleotide excision repair
HCG48_04075
03430 Mismatch repair
HCG48_04075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oxy03032
]
HCG48_04075
03400 DNA repair and recombination proteins [BR:
oxy03400
]
HCG48_04075
Enzymes [BR:
oxy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HCG48_04075
DNA replication proteins [BR:
oxy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HCG48_04075
DNA repair and recombination proteins [BR:
oxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HCG48_04075
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCG48_04075
MMR (mismatch excision repair)
DNA ligase
HCG48_04075
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCG48_04075
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HHH_2
OB_DNA_ligase
HHH_5
CCDC39
FKBP15
ODF2_C
Rod_CreS
CEP135_TSGA10_CC
CENP-F_leu_zip
CCDC146_CC_N
HH_AprE
EzrA
DNA_ligase_ZBD
SPC25_N
APG6_N
ATG16
Rab11-FIP3
CCDC18_1st
DUF1664
Myosin_tail_1
CEP89
MscS_porin
ACBP4_C
CEP131_C
HAP1_N
CC_Bre1
CCDC113_CCDC96_CC
CEP128
Fez1
Taxilin
CCDC171
Filament
Trypan_PARP
IFT57
DUF4200
Ninein_long_CC
Plectin_PPL
AAA_13
PUMA_CC
TMF_TATA_bd
ZapB
GAS
PI3K_P85_iSH2
ALIX_LYPXL_bnd
OVT1
DUF7121
COG6_N
CEP135_N
ABC_tran_CTD
HOOK
DUF3450
PMD1-like
GvpQ-like
Spindly
ADIP
Cep57_CLD_2
DUF724
CEP152_CC1
YEL043W_helical
HAUS1
Helical_RasGEFs
SHE3
Tektin
YGR130C_N
BEGAIN_coil
At4g38062_N
CCDC110
CCDC93_CC
HMMR_N
KASH_CCD
FPP
PII1_coiled_coil
NET2A
YkyA
CCDC178_CC2
Mce4_CUP1
Motif
Other DBs
NCBI-ProteinID:
QIZ69859
UniProt:
A0A6H1TWZ1
LinkDB
All DBs
Position
1025976..1028420
Genome browser
AA seq
814 aa
AA seq
DB search
MTSENHPEAIRTEVEAVTIRVETNGILTPIAQVRAVECGDRSISQATVGGSDRLAALDLH
LGDTVVIDAKNPEAIPEIVGVEAEKRPAQAKRVSLPNRCPECGSPTIALEGDDRMRCTNS
SCPALLPTILRNWTHREAMDISGMGEKLVQQSIDRGLVSSIADLYDLTVDRLVELERMGQ
KSAKKLVKSIAKSKSLPWSRILYGLGIRNVGRHAAQSLAHAFPTVRELAHAEPEAIAAID
RLTPETASAIYYWFRIRANQELILALAKAGLQLTEVELPEAIVPSPEAEPEVQPEPEAKA
EPEVQPEVQPEPEPEPEPEAEPEVQPEVQPEPEAKAEPEVQPEVQPEPEVQPEPEAEPAA
SEELSSLQGELAATIADRDRLDAALSDSQTQLQQVRAQRSSLQAELAKSQQAHSELQTQL
DELRTRSQAGEGETARLQAQLQTQVQEASDRAAELQGEIDRLQAQLQDRDRQGSQLGSEL
DRVRAQLNETQGEKSQLQEQVDRLRELCRRLESEKSELQGQLDGAGQQQAQLQEQIDRLE
SEKSELQGQLDGAGQQQAQLQELCRRLESEKSELQGERDRALTQIQEASDAKAQLESQLA
QTRTQLEQVEGQRSQLDAELAAVKTAQTQVDSQLEAARSQLAQIEQERANLQSQLGETRA
QLQQTEQAQSELQSQLEQTRTQLEQVRETPSQLQEQIDRLQGQLEESGRKNADLDSHLAQ
SHAAQSDLQSQLSQVQDKLQQVQQERTQLQERLKQYESDRTTAESQMVSYTEERSQLAKQ
LEQAQSQGKLLKIAVLLAFGFGSAISWFLSLAIA
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtccgaaaatcacccagaagcaatccgtacggaagttgaagctgtaacgattcgc
gtggaaaccaacgggatcttgaccccgatcgcccaagtgcgcgctgtcgaatgcggcgat
cgctcgatttcccaagccacggttggaggaagcgatcgcctagccgcgttggatttgcac
cttggcgatacggtcgtcatcgacgccaagaaccccgaggcgatacctgaaatcgtcggc
gtcgaggcagaaaaacgtccggcccaagccaaacgggtgagtttaccgaacagatgtccc
gagtgcggttcccccacgatcgccttggaaggggacgaccggatgcgctgtacgaattcc
tcttgtcccgccttgctgccaaccattttacgcaattggactcatcgcgaagcgatggac
atcagtggaatgggtgaaaaactggtgcagcaatcgatcgatcgcggtttggtctcctcg
atcgccgatctctacgatctcaccgtggatcgactggtggagttggagcgtatgggccaa
aaatccgcgaaaaagctggttaagtcgatcgctaagtctaaatctttaccctggtcgcgg
attctctacggtttgggcattcgcaacgtcggacgccatgcggcgcaaagtttggcgcac
gcttttcccacggtaagagagttggcccacgcggaaccggaggcgatcgccgcgatcgat
cgactgaccccggaaaccgcatcggcgatttactactggtttcggattcgagctaaccaa
gagttaattttggcattggcaaaagcaggattacaattaactgaggtcgagcttcccgag
gcgatcgtcccgagtccggaagcggaaccggaagtgcaaccggaaccggaagcgaaagcg
gaaccggaagtgcaaccggaagtgcaaccggaaccggaaccggaaccggaaccggaagcg
gaaccggaagtgcaaccggaagtgcaaccagaaccggaagcgaaagcggaaccggaagtg
caaccggaagtgcaaccagaaccggaagtgcaaccggaaccggaagcggaacccgccgcc
agtgaagaactcagcagtttgcaaggagaattagcagcgacgatcgccgatcgcgatcgc
ctcgatgcagcgttaagcgacagtcaaacccaactgcaacaagttcgcgcgcaaaggtcg
agcttgcaagcagaattagcaaaatctcaacaagcgcattccgagttacaaacgcaactc
gacgaactgcggacgcgatcgcaagcgggagaaggcgaaacagctcgtttacaagcgcaa
ttgcaaactcaagtgcaagaagcgagcgatcgcgccgccgagttacaaggggagatcgat
cgcctccaagctcaactacaagatcgcgaccgtcaagggtctcaactgggttcggaactc
gaccgcgttcgcgcacaactcaacgagacccaaggggaaaaatcccaattgcaagaacag
gtcgatcgcttgcgcgaactttgtcgtcgcctggagtcggaaaagtccgagttacaagga
caattagacggcgccggacaacagcaagctcaattgcaagaacagatcgatcgcctggag
tcggaaaagtccgagttacaaggacaattagacggcgccggacaacagcaagctcaattg
caagaactttgtcgtcgcctggagtcggaaaagtccgagttacaaggggaacgcgatcgc
gctttaactcaaatccaagaagcaagcgacgcgaaagcgcagttagaatcgcaattagct
caaactcgcacccaattggagcaagtggaagggcagcgatcgcaactggatgcggaattg
gcggcggtgaaaacagcgcagactcaggtcgattcgcaattggaagcggcgcgatcgcaa
ttggcgcaaatcgagcaggaacgggcgaatttacaatcgcagttgggagaaacccgggct
cagttgcagcaaaccgagcaggcgcaatcggagttgcagtcgcagttggagcagacgcgc
acccagttggagcaggtgcgagagaccccctcgcaattgcaggagcagatcgatcgattg
cagggacagttggaggagtcgggacgcaaaaatgcggatctcgacagtcatttagcgcaa
tcccacgcggcgcaatcggatttgcaatcgcaactgtctcaagttcaggataagttgcag
caggtgcaacaggaacggacgcaactgcaagaacgactcaagcagtacgagagcgatcgc
acgacggcagaatcgcaaatggtgagttataccgaggagcgatcgcagttggcgaagcag
ttggaacaggcgcaatcccaagggaagttattgaaaatcgccgtattgttggcgtttggc
tttgggtcggcgatttcgtggttcctgtcgttggcgatcgcgtag
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integrated database retrieval system
